Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g1382 ATGGCGGTGCGGGCCACTGTGTCGCGTTTCCCGATGGACACGGACGCCCGCGAGGGCTCGGGCCTCCTCTGGGGAGTAACCGTCACGCCGTTCTCCGCCGCCGACGAGAATGCCCGCGCTCCGTCGTACGGCTCCGGCGGCGACCTCTTGCCCCGGTGCGAGAACTGCTGGGCTTACTTCAACACCTACTGCGAGCTGGAGCAGTGGTCCTGGTCCTGCTCCCTCTGCGGCAACCTCAACGGCCTCTCCTCCGACGCCATCGACCGCTACTCTCGCCCTCAGTCCTGCGCCGAGATGATGTCCTCCTTCGTAGATCTCGAATTGCCTTCGCAGGAACTGGCGGAGGAAGCGGCAATGCAGGCGTGTCCGGTTTATGTTGCTGCTGTTGACTTGTCCTCTTCAGAGGAGTTTCTAGAACTTACCAAAAGTGCATTGCTGGCAGCTCTGGAAGCTCTTGCTCCTGGTTCACTTTTTGGGCTTGCTACCTTCAGCCACAAACTAGGATTGTATGATGTTCAAGGTCCAATACCTGTTGTGAAAAATGTTTTCATCCCTCCTGATGCAGAGGGAACCCTGCCTATTGAGCTTGAAGATGTCATGCCTTTGTTACAGTTTCTGGCTCCTGTGGAAACTTATAAGGACCGTATTGCATCTGCACTTGAAACACTTAGACCAACAACTTCATGGGAGAGAACCACGACAGCAGGTCAAGGGCTGGATGGTGTTCTGATAGGTGGGCGTGGTTTTGGGATGGCAATGGAAGCTCTCTGCAATTACCTTGGTTCTGAATATGGGAACACTTTTGCTTTAGCTAGAGTCTTTGCCTTCTTGTCTGGTCCCCCTGATTATGGAGCTGGACAATTGGACACGAGACGATATGGTGAACAATATGCAAGCAAAGGAGAGGATGCAGATCGTGCTTTACTCCCAGAGCAGACACCCTTTTATAAAGATCTGGCTGCTGTTGCTGTTCAAGCAGGTGTATGTGTTGACATATTTGCCGTAACAAATGAGTACGCTGATTTGGCATCCCTAAAATTTCTGAGTATTGAAAGTGGGGGTTCCTTATTTTTATACACAAGTACTGAGGATTCAACATTGCCTCAGGACATGTATCGAATGCTGAGTCGACCATATGTTTTTGGTTGTGTCCTGCGGTTAAGAACCTCGACTGAATTTAAACCTGGCAATTCTTATGGTCACTTCTTTCCAGATCCACAGTATGAAAATGTTCAACACATCATATGTTGTGATTCTTATGCTACATATGCTTACGACTTTGTGTTTGAGAACAACATTGGATTTTCAAGAAGTAAATCAGATGTTCCTACAATTCAGATTGCATTCCAGTACTCAGTTGTAGTTCCTCCTCAGGAACTTTCTGATTCTAATTCAGGAGGGGTTTCTACAAATAGAACCAAGCACTCCCTTCAGCGTCGGCTAAGGATCCGAACATTGCAATTTGGTGTTGCTCAGAACATTCATGAACTTTATGATAGCTGTGATCCTGAAGTTGTTCTATCTTTGCTTGTTCACAAGGTTATATTAGCCTCTTTGGAGGAAGGAGTTAGGGAGGGTAGAATTTTGCTTCAAGAATGGCTAGTGATCCTGACAGCTCAGTACAATGATGCATATAAGCTTATTCAGTATGATAATGGAAGTTCCATAAGATCTCAGATTGATGTTGCATTCTCTCAATGTCCTCAATTGCAGCCCCTACCACGCCTAATTTTTGCTCTCCTTCGAAATCCTCTTCTCCGCTTTCATGAAGAGGGTGTTCATCCTGACTATCGCATCTATCTTCAATGCCTTTTCAGCATGTTGGAACCCAGTTCCCTTCATCGTGCTGTGTATCCCATGTTGACATCATATGCTACTCCAGATAAACAAGCATATCCTCGCCATTCTTTGAGCCGTGCAGCATTGATTACCAGTGGCAGTCCGATATTTTTCCTTGATGCATTCACAATTCTGATAGTGTTTTATTCTTCGACAGCAGACCCGACGCTTCCTTTTCCTCCACCCCATGATTGTTTGTTAAGGACTACAATCAACAAATTGAAGCAGGAGAGATGCATCACTCCCAAGCTGATTTTTATTCGAGGAGGGCATGATGATGCCTCAATTTTTGAGAACTTTCTGATCGAAGAGCAGGATGTTGATGGAAGTGGTCTTACCAGTGTTATGGGTTTTGTTTCCTTCCTTGAAGATACTACACAGAAAGTTTTAGAATTCATGAAATAG 2244 0.4635 MAVRATVSRFPMDTDAREGSGLLWGVTVTPFSAADENARAPSYGSGGDLLPRCENCWAYFNTYCELEQWSWSCSLCGNLNGLSSDAIDRYSRPQSCAEMMSSFVDLELPSQELAEEAAMQACPVYVAAVDLSSSEEFLELTKSALLAALEALAPGSLFGLATFSHKLGLYDVQGPIPVVKNVFIPPDAEGTLPIELEDVMPLLQFLAPVETYKDRIASALETLRPTTSWERTTTAGQGLDGVLIGGRGFGMAMEALCNYLGSEYGNTFALARVFAFLSGPPDYGAGQLDTRRYGEQYASKGEDADRALLPEQTPFYKDLAAVAVQAGVCVDIFAVTNEYADLASLKFLSIESGGSLFLYTSTEDSTLPQDMYRMLSRPYVFGCVLRLRTSTEFKPGNSYGHFFPDPQYENVQHIICCDSYATYAYDFVFENNIGFSRSKSDVPTIQIAFQYSVVVPPQELSDSNSGGVSTNRTKHSLQRRLRIRTLQFGVAQNIHELYDSCDPEVVLSLLVHKVILASLEEGVREGRILLQEWLVILTAQYNDAYKLIQYDNGSSIRSQIDVAFSQCPQLQPLPRLIFALLRNPLLRFHEEGVHPDYRIYLQCLFSMLEPSSLHRAVYPMLTSYATPDKQAYPRHSLSRAALITSGSPIFFLDAFTILIVFYSSTADPTLPFPPPHDCLLRTTINKLKQERCITPKLIFIRGGHDDASIFENFLIEEQDVDGSGLTSVMGFVSFLEDTTQKVLEFMK* 748
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g1382 747 Gene3D Sec23/Sec24 helical domain 472 630 - -
Gso11g1382 747 PANTHER OS05G0443300 PROTEIN 1 745 - -
Gso11g1382 747 PANTHER SEC24-RELATED PROTEIN 1 745 - -
Gso11g1382 747 Pfam Sec23/Sec24 trunk domain 122 374 IPR006896 GO:0006886|GO:0006888|GO:0030127
Gso11g1382 747 Gene3D - 31 101 - -
Gso11g1382 747 SUPERFAMILY Helical domain of Sec23/24 502 618 IPR036175 GO:0006886|GO:0006888|GO:0030127
Gso11g1382 747 SUPERFAMILY vWA-like 123 377 IPR036465 -
Gso11g1382 747 Gene3D von Willebrand factor, type A domain 122 379 IPR036465 -
Gso11g1382 747 SUPERFAMILY beta-sandwich domain of Sec23/24 3 501 - -
Gso11g1382 747 Pfam Sec23/Sec24 helical domain 502 614 IPR006900 GO:0006886|GO:0006888|GO:0030127
Gso11g1382 747 SUPERFAMILY Zn-finger domain of Sec23/24 45 110 IPR036174 GO:0006886|GO:0006888|GO:0008270|GO:0030127
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g1382 Gso-Chr11 15774217 15781827 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g1382 - - gmx:100784551 1480.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso11g1382 11 15774217 15781827 Gso11g1382 11 15774217 15781827 ECH
Gso12g0730 12 7387894 7398177 Gso11g1382 11 15774217 15781827 GST