Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g1347 ATGATCCCTCTTATAACAGTAAGAGTAATAGTGCTCCTCTTATTAGGTGTCACACTCCAAATAACCAAGCCCGTGGTTGTGAAGGGTTTTCCACTACACACGAGTGAACGGTGGATTGTGGACGAAAGTGGGAAGAGGGTGAAGCTAGCATGTGTTAATTGGGTGTCCCATTTGGATGCTGTGGTGGCTGAGGGCTTAAGCCAACAACCTTTGGATGAGATTTCCAAGAGAATCAAAACCATGGGGTTCAACTGTGTAAGACTCACATGGCCACTTTTCTTGGTCACTAATGACTCTATTGCTTCTCTCACTCTGAGAAACTCTTTCCAAAATCTTGGCCTAATTCAATCCTTGAATGGTGTCCAAGCCATCAACCCCTCCATCATCGATCTTCCCCTCATCAAAGCTTACCAGGCAGTGGTGAAAAGCCTTGGAGAGAACGATGTAATGGTGATTTTGGACAACCACGTGAGCCAGCCAGGGTGGTGCTGCAGTAACTTGGACGGCAATGGCTTCTTTGGGGATCAGTATTTTGATCCAGACCTCTGGATTATGGGCCTTACAAAGATGGCTACTATTTTCAAAGGTGTGACTAATGTGGTAGCCATGAGCTTGAGAAATGAACTACGAGGTCCCAGACAAAATGTCAACGTTTGGTACAGGTACATGCCAAAAGGAGCAGAAGCAGTGCATGCAGCAAATCCAGATGTTCTTGTGATTCTATCTGGCCTAAACTTTGACACGAACCTATCATTCATAAGAAATGAGGCAGTGAAACTCAGCTTCAATGGGAAACTAGTGTTTGAGGTGCACTGGTACAGCTTCAGTGATGGTCAGGCATGGACATTAGGGAATCCAAACCAAGTGTGTGGGCAAGTCACAGAGAATGTGATGAGAAGGGCAGGGTTCTTGTTGGACCAAGGGTGGCCATTGTTTGTGAGTGAATTTGGGGTGGACTTGAGAGGCACAAGTGTGAATGACAATAGGTACCTCAACTGTTTCATGGCACTGGTGGCCCAACTTGACTTGGATTGGGCCTTGTGGACACTGGGTGGGAATTATTACATTAGACAAGGGGATGTTGGAATGGAGGAATATTTTGGTATTCTCAATTCAGATTGGATTCAGGTTAGGAACACAAGTTTCTTGCAAAGGATCTCAGCTATTCAACTTCCTTTCAAAGGGCCAGGGTTATCAGAAGCTAAACCATACAAAGTAATTTTTCACCCATTGACAGGTCTTTGCATCTTAAGAAATTCACCGGTTGAGCCATTGATGAGGTTGGGACCTTGTTCTAATTCTGATGCATGGGAATACACGGACCAAAAGATACTATCAATAAAGGGTACCTATTTCTGTCTACAGGCAGAGGAAGAAGGGAAGCAAGCAAAACTTGGAAATGCATGTTCAGGTTCCAATTCAAGATGGGAAATGATCTCTGATTCAAAGATGCACCTCTCAACTCAAACCAACAATGCTTCTGGTGTGTGTCTTGATGTAGACACCAACAACATCATTGTCACCAATATTTGCCAATGCCTAAGCAAAGATAACACTTGTGACCCTGCAACCCAATGGTTCAAACTTGTTGACAGCACAAGGAAGTCTCGGCATTATCTAAGGATTCCAAGTTAA 1635 0.4422 MIPLITVRVIVLLLLGVTLQITKPVVVKGFPLHTSERWIVDESGKRVKLACVNWVSHLDAVVAEGLSQQPLDEISKRIKTMGFNCVRLTWPLFLVTNDSIASLTLRNSFQNLGLIQSLNGVQAINPSIIDLPLIKAYQAVVKSLGENDVMVILDNHVSQPGWCCSNLDGNGFFGDQYFDPDLWIMGLTKMATIFKGVTNVVAMSLRNELRGPRQNVNVWYRYMPKGAEAVHAANPDVLVILSGLNFDTNLSFIRNEAVKLSFNGKLVFEVHWYSFSDGQAWTLGNPNQVCGQVTENVMRRAGFLLDQGWPLFVSEFGVDLRGTSVNDNRYLNCFMALVAQLDLDWALWTLGGNYYIRQGDVGMEEYFGILNSDWIQVRNTSFLQRISAIQLPFKGPGLSEAKPYKVIFHPLTGLCILRNSPVEPLMRLGPCSNSDAWEYTDQKILSIKGTYFCLQAEEEGKQAKLGNACSGSNSRWEMISDSKMHLSTQTNNASGVCLDVDTNNIIVTNICQCLSKDNTCDPATQWFKLVDSTRKSRHYLRIPS* 545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g1347 544 PANTHER CELLULASE FAMILY PROTEIN (AFU_ORTHOLOGUE AFUA_5G14560) 6 538 - -
Gso11g1347 544 Gene3D - 407 528 - -
Gso11g1347 544 SUPERFAMILY (Trans)glycosidases 31 379 IPR017853 -
Gso11g1347 544 Gene3D Glycosidases 30 391 - -
Gso11g1347 544 SUPERFAMILY Ricin B-like lectins 402 527 IPR035992 -
Gso11g1347 544 CDD RICIN 404 529 IPR000772 -
Gso11g1347 544 Pfam Cellulase (glycosyl hydrolase family 5) 67 352 IPR001547 GO:0004553|GO:0071704
Gso11g1347 544 PANTHER GLYCOSIDE HYDROLASE FAMILY 5 PROTEIN 6 538 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g1347 Gso-Chr11 15186706 15190657 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g1347 30 544 Glycoside Hydrolase AT1G13130 58.654 0.0 654
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g1347 - - gmx:100816102 1096.26