Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g1235 ATGAATAGGGCGAGAACTGAAGGCATAACTTTCACGAAGGAGCCGTTCATGGAGGATACAGGGCCTCGCAAGATAAAGAACATGAAGTTCTCCACGTTATCAGAATCGGAAATAAGCAAAATCGCTGAAGTTCAAGTGTGGAAAGGTTCCTACTATGACTCCTTTAAGAAGCCTATCCACGGTGGCTTGTTGGATCCTCGCATGGGCCCTGCTAATAAGAGTCTTGTCTGTGCAACATGCGATGGGAACTTTCATGATTGTCCAGGGCACTATGGATACTTAAACCTTGCCCTTCCTGTTTTCAATGTTGGATATTTAAGTACCATTGTGGAAATACTGAAGTGCATTTGTAAGGGCTGTGCTCGTATTCTCCTTGATGAAGATACCCGTAAAAAACATCTGAAGAAAATGAGAAGTTCCAAAAAGAGTGAGCTGGATAAGATTGATTTTGTGAAAGTTCGTGTAATTAAAGATTGTAGCAAAGTTGTGAATTGCCCAAGATGCGGATATATCAATGGTTCAGTAAAGAAGCTTCCGGCTTCGCTGACAATCATACATGATTGCTCAAAATGTAGAAATTATATTGTTGAAGAGCTTGATTCCGCACTTTCTCGTATGAAAGACTCTAGGGCGACCACCAATGTGTCTAATCGAATTCTTAATCCTTTCCAAGTTCTTTCCCTGTTTAAAAGAATGCTTGATGAGGACTGTGAATTACTTTATGTTGCTGAAAGACCAGAGAAACTCATAATGACAAACGTTGTTGTGCCACCTATAGCTATTCGACCTTCAGTTGTTATGGATGAATCACTGAGCAACGAAAATGACATAACAGAGAGGCTAAAGAACATAATCCAAGCAAATGCTGTTTTGCGCCAGGAATTACAAGAATCAACTTTTTCGTCCAAATTTCTGGATGGTTGGGATATCCTTCAAAATGAAGTTGCTCAGTTTATAAATAGTGATGTCCGTGGTATACCATTCTATATGCAACCGACCAAGCAATTGGCTGGTTTTGTTCAGCGCTTGAAAGGGAAGCATGGACGTTTCCGCGGCAACTTATCTGGTAAACGTGTTGAATATACTGGCAGGACAGTTATTTCACCCGATCCTAATCTGAAGATTTCAGAGGTTGCAATACCCATCCATATGGCTCGTATATTGACTTATCCTGAGCGTGTTACTCACCACAACATAGAAAAGTTGAGACAATGTGTGAGAAATGGTCCCGATAAGTATCCTGGTGCGAGAATGCTTAGACGTGATGGAGGTCACTCATGGTCCTTAAAAGTTCTTTGTAGGAAGCGTGCTGCAGATGAATTGAGGATTGGTGATATTGTTGATCGCCATTTGGAAGATGGAGACATTGTTCTTTTCAATAGACAGCCAAGCTTGCATCGGATGTCTATAATGTGTCACAGGGCAAGGATTATGCCTTGGAGAACTTTAAGATTCAATGAATCTGTATGTAACCCATATAATGCTGACTTTGATGGTGATGAGATGAACTTACATGTCCCACAGACTGAGGAGGCTAGGACAGAGGCTATTTTGTTGATGGGGGTGGAAAACAATTTGTGCACTCCAAAAAATGGCGAGATTCTGGTTGCTTCTACTCAAGACTTTTTAACCTCTTCCTTTCTCATAACCAGGAAAGATACTTTTTACGACCGTTCTACCTTTTCACTTATTTGCTCGTACATAGGTGATGGCATGGATCCTATTGATCTGCCAACTCCCGCAATTGTTAAGCCAGTTGAACTTTGGAGTGGTAAGCAGTTATTTAGCATTATACTGCGCCCACATGCTAATATGAGAGTCTATGTGAATCTTACTGTTAAGGAGAGAAACTACACTGAAGACAAGAAAATAAAAGACAAGAAAATAGAATGGAAAACATTGTGCCCAAATGATGGGTTTGTTTATTTTCGTAATAGCGAGTTGATCTCTGGACAAGTTGGAAAGGTTACTTTAGGAAATGGCAACAAAGATGGACTGTTCTCTGTGCTACTGAGAGACTATAGAGCACATGCTGCTGCATCTTGCATGAATCGTTTAGCTAAATTGAGTGCACGATGGATTGGCAATCATGGGTTCTCAATAGGCATTGATGATGTCCAACCAAAAGAGATTCTGATTAACAAGAAAGATGAAACAATTTCAGAAGGTTATAGGGAATGTGATAAACACATAGAAGCTTTCAATAAGGGAAAACTAGAACTCTTAGCTGGTTGTGATGCTGCGCAGACATTAGAGACTCGGATTACTGGGGTATTAAATGGACTTCGTGATACGGCAGGGAAGGTCTGCATGCAAACCCTACACTGGAGAAATAGTCCATTGATCATGTCACAATGTGGCTCCAAAGGATCTTCTATTAATATCAGTCAAATGGTTGCCTGTGTTGGTCAACAATCAGTCGGTGGTCGTCGTACTCCTAATGGGTTCATAGATCGGAGCCTTCCTCATTTCCCCAGAAAATCAAAAACCCCTGCTGCAAAAGGTTTTGTTGCTAATTCCTTTTACAGTGGATTGTCAGCTACTGAGTTTTTCTTCCATACAATGGGAGGGCGAGAAGGGCTTGTTGATACAGCGGTTAAAACTGCAGACACGGGATATATGTCTCGTCAATTAATGAAATCCCTAGAGGATTTGTTTTTACATTATGATTATACTGTAAGAAATGCTGGTGGCTCTATTGTTCAATTTTGCTATGGAGATGATGGTATGGATCCAGCAGGCATGGAAGGAAAAAATGGAAAACCATTGAATTTTGAGCGGTTGTTTCTTAAAAGCAAGGCCATATGTCCCAATGATGAAGATGATGAAATTTTATCTTCCTCAGATGTGAGTAAAGTAGTTCATGAGAAGCTCTCAGAATTTGATTTGTCTAGGTTAGCAGAGAAAGGGGTTTTTGAGGTGGGCTTCTCTGCTGACTTCGTTGAATCTCTACAATCCTTTATCAAAGATAATGCAAAATTAACGGAAGAAGGTTTCACTGATGAGCATTCTCAAAACCTGAAAAAATTTGGGCAGAGGATATCTGGGATCACTCGTAAACAGCTAGATGTTTTTTTGAATATTTGTCTATCTCGTTATCATTCCAAAAAAATGGAGGCTGGAGCTCCTGTTGGTGCAACTGGAGCTCATAGTATTGGAGAGCCTGGGACCCAGATGACTTTGAAAACTTTCCACTTTGCTGGAGTTGCAAGCATGAATGTTACTCTTGGAGTTCCTCGTGTCAAAGAAATAATGAATGGAAACAAAAAAATCAGTACACCAATTATCACTGCTATACTTGAGAGGGATGACAATGCAAATACTGCAAGAATTGTAAAAGGTCGAATAGAAAAAACAAATTTAGGCCAGGTTGCAAAGAGTATAAAAGTTGTTATGACTTCAAGATCAGCATCAGTTGTTATCACCCTTGACATGAAAAGAATCCAGGATGCACATCTAAATATAGATGCTAATATTGTAAAAGAATCAATTTTACGAACTAAAAAGACAAAACTGAAACCAGAGCATATCAAGATTTTAGATATTAAAAAGCTTGAAGTGGTTCCCCAAGATGTGGATAGAAGTAAAATCCATTTTCAGCTTCACTATCTGAAAAATTTGCTTCCGACAGTTGTAGTGAAGGGCATTAAAACTGTGGATCGAGTTGTTATCAGTAAAGACACCAAGGCTGAAAAGTTCAGATTACTGGTGGAAGGCACGGGTTTTCGAGAGGTTATGGGAGTTGAAGGGATTGATGGACGTAAAACTGTTAGTAATCATATCCACGAAGTGAGGGACACACTGGGAATTGAAGCTGCTAGAGAGAGTATTGTTAAGGAGATAAAGTATACAATGGTGGATACACATGGAATGAATATAGACATACGCCATATGATGCTTCTAGCAGATATGATGACTGCCACGGGTCATATCCTTGGAATAAATAGATTTGGAATTTCAAAGATGGGCAAAAGTGTATTAATGCTTGCATCATTCGAGAGGACAGCAGATATTCTTTTCCAGGCATCTGTACGTGGGAGGGATGACTCGATTGGTGGAGTAAGTGAATCCATAATCATGGGTATACCAATTCAAATAGGTACTGGAATGATCAAGGTCAAACAAAGGTTGGATCCTCCGGAGTTGCCTCATGGTACCAGTCCTATTCTATCTTGA 4176 0.3999 MNRARTEGITFTKEPFMEDTGPRKIKNMKFSTLSESEISKIAEVQVWKGSYYDSFKKPIHGGLLDPRMGPANKSLVCATCDGNFHDCPGHYGYLNLALPVFNVGYLSTIVEILKCICKGCARILLDEDTRKKHLKKMRSSKKSELDKIDFVKVRVIKDCSKVVNCPRCGYINGSVKKLPASLTIIHDCSKCRNYIVEELDSALSRMKDSRATTNVSNRILNPFQVLSLFKRMLDEDCELLYVAERPEKLIMTNVVVPPIAIRPSVVMDESLSNENDITERLKNIIQANAVLRQELQESTFSSKFLDGWDILQNEVAQFINSDVRGIPFYMQPTKQLAGFVQRLKGKHGRFRGNLSGKRVEYTGRTVISPDPNLKISEVAIPIHMARILTYPERVTHHNIEKLRQCVRNGPDKYPGARMLRRDGGHSWSLKVLCRKRAADELRIGDIVDRHLEDGDIVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNLHVPQTEEARTEAILLMGVENNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRSTFSLICSYIGDGMDPIDLPTPAIVKPVELWSGKQLFSIILRPHANMRVYVNLTVKERNYTEDKKIKDKKIEWKTLCPNDGFVYFRNSELISGQVGKVTLGNGNKDGLFSVLLRDYRAHAAASCMNRLAKLSARWIGNHGFSIGIDDVQPKEILINKKDETISEGYRECDKHIEAFNKGKLELLAGCDAAQTLETRITGVLNGLRDTAGKVCMQTLHWRNSPLIMSQCGSKGSSINISQMVACVGQQSVGGRRTPNGFIDRSLPHFPRKSKTPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRQLMKSLEDLFLHYDYTVRNAGGSIVQFCYGDDGMDPAGMEGKNGKPLNFERLFLKSKAICPNDEDDEILSSSDVSKVVHEKLSEFDLSRLAEKGVFEVGFSADFVESLQSFIKDNAKLTEEGFTDEHSQNLKKFGQRISGITRKQLDVFLNICLSRYHSKKMEAGAPVGATGAHSIGEPGTQMTLKTFHFAGVASMNVTLGVPRVKEIMNGNKKISTPIITAILERDDNANTARIVKGRIEKTNLGQVAKSIKVVMTSRSASVVITLDMKRIQDAHLNIDANIVKESILRTKKTKLKPEHIKILDIKKLEVVPQDVDRSKIHFQLHYLKNLLPTVVVKGIKTVDRVVISKDTKAEKFRLLVEGTGFREVMGVEGIDGRKTVSNHIHEVRDTLGIEAARESIVKEIKYTMVDTHGMNIDIRHMMLLADMMTATGHILGINRFGISKMGKSVLMLASFERTADILFQASVRGRDDSIGGVSESIIMGIPIQIGTGMIKVKQRLDPPELPHGTSPILS* 1392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g1235 1391 PANTHER DNA-DIRECTED RNA POLYMERASE 12 1377 IPR045867 GO:0003899|GO:0006351
Gso11g1235 1391 SMART rpolaneu7 247 550 IPR006592 GO:0003677|GO:0003899|GO:0006351
Gso11g1235 1391 CDD RNAP_III_Rpc1_C 1032 1371 IPR035698 -
Gso11g1235 1391 Pfam RNA polymerase Rpb1, domain 4 732 837 IPR007083 GO:0003677|GO:0003899|GO:0006351
Gso11g1235 1391 Pfam RNA polymerase Rpb1, domain 5 844 1325 IPR007081 GO:0003677|GO:0003899|GO:0006351
Gso11g1235 1391 Pfam RNA polymerase Rpb1, domain 1 23 354 IPR007080 GO:0003677|GO:0003899|GO:0006351
Gso11g1235 1391 Gene3D RNA polymerase ii 389 449 - -
Gso11g1235 1391 Gene3D RNA polymerase II, clamp domain 15 140 IPR044893 -
Gso11g1235 1391 Gene3D - 706 823 IPR038120 -
Gso11g1235 1391 Pfam RNA polymerase Rpb1, domain 3 525 706 IPR007066 GO:0003677|GO:0003899|GO:0006351
Gso11g1235 1391 Gene3D - 883 934 - -
Gso11g1235 1391 SUPERFAMILY beta and beta-prime subunits of DNA dependent RNA-polymerase 18 1376 - -
Gso11g1235 1391 Gene3D RNA polymerase Rpb1, domain 3 530 705 IPR042102 -
Gso11g1235 1391 Gene3D - 1326 1371 - -
Gso11g1235 1391 Gene3D - 824 882 - -
Gso11g1235 1391 Gene3D - 348 529 - -
Gso11g1235 1391 PANTHER DNA-DIRECTED RNA POLYMERASE III SUBUNIT RPC1 12 1377 - -
Gso11g1235 1391 CDD RNAP_III_RPC1_N 33 894 IPR035697 -
Gso11g1235 1391 Pfam RNA polymerase Rpb1, domain 2 356 522 IPR000722 GO:0003677|GO:0003899|GO:0006351
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g1235 Gso-Chr11 11230120 11259460 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g1235 K03018 - gmx:100811292 2768.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso11g1235 11 11230120 11259460 Gso11g1235 11 11230120 11259460 ECH