Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g1163 ATGTTGTCTGAATTGGGAAGAAGACCTATGCTTGGGAGTAACGAGGGTTCTTTTGGTGATGAATTGGAGAAGGAGATCGGGATGTTGCTTCGTGAGCAACGCAGACAAGAGGCTGATGATCGTGAACGAGAGCTTAATATTTATAGGAGTGGATCAGCGCCTCCAACTGTGGAGGGTTCTTTGAGTGCTGTTGGAGGGTTGTTTGGTGGTGCTGCTGGTGCTCCTGCCACTGGTGCTCCTGTCGCCTTTTCGGAATTTCAAGGGACTAAGGATGTGAATGGGATTACTTCTGAGGAAGAGCTTAGGTCTGATCCAGCGTATCTTTCATACTACTACTCCAATGTGAATTTGAACCCTAGGCTGCCACCTCCTTTGCTGTCAAAGGAGGATTGGAGGTTTCAACAAAGACTTAAAGGTGGAGCTTCAGCTCTGGGTGGAATTGGAGATAGGAGGAAAGTGAACAGAACTGATGATAATGGTGGAAGATTGCTTTTTCCTACCCCGCCAGGTTTTAACATGAGGAAACAAGAGAGTGAGGTAGATAATGAAAAAACAAGAGGTTCGGCCGAGTGGGGTGGTGATGGACTGATTGGTTTGCCTGGACTAGGGCTAAGCAAACAGAAGAGTTTTGCCGAAATTTTTCAGGATGATTTGGGGCATAATACCTCTATTGCACGCCTTCCTTCTCGTCCATCCAGTCGTAATGCATTTGATGAAAATGATATCAGTAGTTCTGCTGATGCAGAGTTGGCTCATGTACACCGTGAGTCCACACCCGCTGATGTGCTCAGGTCAGGATCATCTGCGGCCCAAAATGTTGGCCCACCAGCTTCATATTCCTATGCTGCTGCAGTTGGATCTTCCTTGTCGAGAAGCACTACTCCTGATCCACAACTTGTTGCTAGGGCTCCCAGTCCCTGCATCACGCCAATTGGTGGTGGCAGAGCCATTGCTTCTGACAAGAGAGCTATTGCCAGTCAAGATGCATTTAATGGTGTTTCATCTGGCATTAATGAGTCAGCGGATCTTGTGGCTGCATTGTCAGTAATGAACTTGTCAGCTGATGATGTGCTTGATGGTGAAAACCATTTGCCATCACAGGTTGAATCAGATGTTGATAATCACCAGAGATATCTTTTTGGTAGGCAAGGTGGTCAAGAACATGGGAAGCAACATGCCTATTTAAAGAAATCTGAATCAGCACACCTGCAAAATTCAAGAGCAAGCAGCAGGAGTGGGTCAGATCTCAACAATCCATCCTTGGATAGGCAGGTTGAGCTACAAAAGTCTACTGTTCCTTCCAATAACTCATATTTCAAAGGATCACCTACCTCCCATTTTAGTAGAGGAGGAAGTATGCCACCCCAGTACCAGCCTTTAGATAGTACAAATTCCTCATTTGGTAACTATGGTCTGAGTGGCTATGCTGGAAATCCAGCATTGGCATCCTTGATGACTAACCAACTTGGCACTGGTAATCTGCCACCCTTGTTTGAAAATGTTGCTGCAGCATCAGCAATGGCATCCCCTGGAATGGACTTGAGAATTCTTGGAGGTGGTTTGGCTTCTGGAGCTGCTGCTCCATCTGATGTGCATAATCTTGGTAGGATGGGAAATCAAATTCCAGGCAGTGCTCTTCAGGCTCCTTTTGTCGATCCAATGTATCTTCAGTACCTGAGGACGTCTGAGTTTGCTGCGGCACAACTTGCTGCTCTCAATGACCCCTCTGTGGACAGGAACTACTTAGGCAATTCATACATGAATTTACTTGAGCTTCAGAAAGCTTATCTTGGGTCTATCCTCTCGCCTCAAAAATCCCAATACAATGTACCGCTGGGTGGTAAATCAGGCAGCTCCACTCCTCATGGTTATTATGGAAATCCTGCATATGGTGTCGGGATGTCTTACCCAGGAAGTCCAATGGCAAACTCTGTTGTATCCACTTCCCCAGTTGGATCTGCAAGTCCTGTTAGGCACAATGAACTGAATATGCGTTTTGCTTCTGGAATGAGGAATTTGGCCGGGGTCATGGGACCTTGGCATGCAGATACTGGGAACATTGATGAAAGTTTTGCTTCTTCTCTGTTGGAAGAGTTTAAAACCAATAAAACAAAGTGTTTTGAGCTCTCTGAAATTGCGGGTCATGTTGTTGAATTCAGTGCGGATCAATATGGGAGTCGATTTATTCAACAAAAGCTTGAAACAGCTACTACAGAAGAAAAAAACATGGTTTATCAGGAAATCATGCCACATTCCCTTGCTTTGATGACTGATGTCTTTGGTAATTATGTGGTTCAAAAGTTTTTTGAGCATGGACTTGCATCCCAGAGAAGAGAATTAGCCAACAAACTTCTTGGTCATGTTCTGACACTTAGCCTTCAAATGTATGGTTGCCGTGTCATCCAGAAGGCCATTGAAGTTGTTGATCTGGATCAGAAGATAGAGATGGTTCAAGAGCTTGATGGTAATGTCATGCGCTGTGTACGCGATCAGAATGGTAATCATGTCATTCAGAAGTGTATTGAATGTGTCCCTGAAGATGCTATCCACTTTATTGTCTCAACATTTTTTGATCAAGTTGTGACCCTATCAACACATCCGTATGGTTGCCGGGTGATACAGAGAGTGCTGGAACATTGCAAAGACCCTACAACACAGCAGAAAGTTATGGATGAAATTTTAGGTGCAGTTAGCATGTTAGCTCAGGATCAGTATGGCAACTACGTTGTTCAGCATGTGCTGGAACATGGGAAGCCTCATGAGCGTTCTTGTATAATAAAGGAATTAGCAGGCAAGATAGTTCAAATGAGTCAACAGAAGTTTGCCTCCAATGTTGTAGAGAAATGTTTGACCTTTGGAGGTCCTTCTGAGCGCCAATTACTAGTGAGTGAGATGCTTGGGACCACCGATGAAAATGAGCCTCTTCAGGCGATGATGAAAGATCAATTTGCAAATTACGTTGTACAAAAGGTGCTGGAAACTTGTGATGATCAACAACGTGAGCTGATTCTTTCCCGAATTAAGGTTCATTTGAATGCATTGAAAAAGTACACCTATGGAAAACACATCGTCACGCGTGTAGAAAAACTTGTTGCTGCTGGAGAAAGGAGAATAGCTGCTCAGGCTCCTCCTCAACCTGCTTAG 3144 0.4462 MLSELGRRPMLGSNEGSFGDELEKEIGMLLREQRRQEADDRERELNIYRSGSAPPTVEGSLSAVGGLFGGAAGAPATGAPVAFSEFQGTKDVNGITSEEELRSDPAYLSYYYSNVNLNPRLPPPLLSKEDWRFQQRLKGGASALGGIGDRRKVNRTDDNGGRLLFPTPPGFNMRKQESEVDNEKTRGSAEWGGDGLIGLPGLGLSKQKSFAEIFQDDLGHNTSIARLPSRPSSRNAFDENDISSSADAELAHVHRESTPADVLRSGSSAAQNVGPPASYSYAAAVGSSLSRSTTPDPQLVARAPSPCITPIGGGRAIASDKRAIASQDAFNGVSSGINESADLVAALSVMNLSADDVLDGENHLPSQVESDVDNHQRYLFGRQGGQEHGKQHAYLKKSESAHLQNSRASSRSGSDLNNPSLDRQVELQKSTVPSNNSYFKGSPTSHFSRGGSMPPQYQPLDSTNSSFGNYGLSGYAGNPALASLMTNQLGTGNLPPLFENVAAASAMASPGMDLRILGGGLASGAAAPSDVHNLGRMGNQIPGSALQAPFVDPMYLQYLRTSEFAAAQLAALNDPSVDRNYLGNSYMNLLELQKAYLGSILSPQKSQYNVPLGGKSGSSTPHGYYGNPAYGVGMSYPGSPMANSVVSTSPVGSASPVRHNELNMRFASGMRNLAGVMGPWHADTGNIDESFASSLLEEFKTNKTKCFELSEIAGHVVEFSADQYGSRFIQQKLETATTEEKNMVYQEIMPHSLALMTDVFGNYVVQKFFEHGLASQRRELANKLLGHVLTLSLQMYGCRVIQKAIEVVDLDQKIEMVQELDGNVMRCVRDQNGNHVIQKCIECVPEDAIHFIVSTFFDQVVTLSTHPYGCRVIQRVLEHCKDPTTQQKVMDEILGAVSMLAQDQYGNYVVQHVLEHGKPHERSCIIKELAGKIVQMSQQKFASNVVEKCLTFGGPSERQLLVSEMLGTTDENEPLQAMMKDQFANYVVQKVLETCDDQQRELILSRIKVHLNALKKYTYGKHIVTRVEKLVAAGERRIAAQAPPQPA* 1048
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g1163 1047 MobiDBLite consensus disorder prediction 384 458 - -
Gso11g1163 1047 SMART pum_5 855 891 IPR001313 GO:0003723
Gso11g1163 1047 SMART pum_5 783 818 IPR001313 GO:0003723
Gso11g1163 1047 SMART pum_5 928 963 IPR001313 GO:0003723
Gso11g1163 1047 SMART pum_5 747 782 IPR001313 GO:0003723
Gso11g1163 1047 SMART pum_5 711 746 IPR001313 GO:0003723
Gso11g1163 1047 SMART pum_5 970 1005 IPR001313 GO:0003723
Gso11g1163 1047 SMART pum_5 892 927 IPR001313 GO:0003723
Gso11g1163 1047 SMART pum_5 819 854 IPR001313 GO:0003723
Gso11g1163 1047 CDD Pumilio 707 1027 IPR033712 GO:0003723
Gso11g1163 1047 MobiDBLite consensus disorder prediction 144 192 - -
Gso11g1163 1047 MobiDBLite consensus disorder prediction 398 458 - -
Gso11g1163 1047 Pfam Pumilio-family RNA binding repeat 830 853 IPR001313 GO:0003723
Gso11g1163 1047 Pfam Pumilio-family RNA binding repeat 978 1007 IPR001313 GO:0003723
Gso11g1163 1047 Pfam Pumilio-family RNA binding repeat 787 820 IPR001313 GO:0003723
Gso11g1163 1047 Pfam Pumilio-family RNA binding repeat 898 929 IPR001313 GO:0003723
Gso11g1163 1047 Pfam Pumilio-family RNA binding repeat 933 966 IPR001313 GO:0003723
Gso11g1163 1047 Pfam Pumilio-family RNA binding repeat 753 784 IPR001313 GO:0003723
Gso11g1163 1047 Pfam Pumilio-family RNA binding repeat 715 749 IPR001313 GO:0003723
Gso11g1163 1047 Pfam Pumilio-family RNA binding repeat 859 894 IPR001313 GO:0003723
Gso11g1163 1047 MobiDBLite consensus disorder prediction 254 273 - -
Gso11g1163 1047 ProSiteProfiles Pumilio RNA-binding repeat profile. 964 1005 IPR001313 GO:0003723
Gso11g1163 1047 ProSiteProfiles Pumilio RNA-binding repeat profile. 855 891 IPR001313 GO:0003723
Gso11g1163 1047 ProSiteProfiles Pumilio RNA-binding repeat profile. 747 782 IPR001313 GO:0003723
Gso11g1163 1047 PANTHER RNA BINDING PROTEIN PUMILIO-RELATED 36 1039 - -
Gso11g1163 1047 MobiDBLite consensus disorder prediction 1 23 - -
Gso11g1163 1047 ProSiteProfiles Pumilio RNA-binding repeat profile. 928 963 IPR001313 GO:0003723
Gso11g1163 1047 Gene3D - 691 1037 IPR011989 -
Gso11g1163 1047 ProSiteProfiles Pumilio RNA-binding repeat profile. 711 746 IPR001313 GO:0003723
Gso11g1163 1047 Pfam Nucleic acid binding protein NABP 302 710 IPR012940 -
Gso11g1163 1047 ProSiteProfiles Pumilio RNA-binding repeat profile. 819 854 IPR001313 GO:0003723
Gso11g1163 1047 PANTHER PUMILIO HOMOLOG 1-RELATED 36 1039 - -
Gso11g1163 1047 ProSiteProfiles Pumilio RNA-binding repeat profile. 783 818 IPR001313 GO:0003723
Gso11g1163 1047 ProSiteProfiles Pumilio RNA-binding repeat profile. 892 927 IPR001313 GO:0003723
Gso11g1163 1047 SUPERFAMILY ARM repeat 694 1028 IPR016024 -
Gso11g1163 1047 ProSiteProfiles Pumilio homology domain (PUM-HD) profile. 691 1031 IPR033133 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g1163 Gso-Chr11 10430123 10437292 Dispersed/Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g1163 K17943 - gmx:100803806 1984.53
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso11g1163 11 10430123 10437292 Gso11g1163 11 10430123 10437292 ECH
Gso12g0500 12 4437706 4444999 Gso11g1163 11 10430123 10437292 GST