Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g1158 ATGCATGGCCCCCTGAGAAGAAATGCAACATTGCTCGCCACAAATGGCATCATCAGCCGCCATTTCTTCCGATCAGAACCCGAAAGCTATGCTGAACTCATCGATATGTACGCTCGCGATCGAGCGTTGCACGCTGGCAAGAAGCTTCACGCGCACCTAGTCACCAACGGTTTCGCTCGTTTCAACGTCGTTGCTTCCAACCTCGTATCCTTCTACACATGCTGTGGCCAACTCTCCCACGCGCGGAAACTGTTCGACAAAATTCCCACCACAAATGTTCGCCGCTGGATTGCTCTCATTGGCTCCTGCGCTCGCTGCGGCTTCTACGATCACGCTCTCGCCGTGTTCTCTGAGATGCAAGCCGTTCAAGGGCTTACGCCCAACTACGTATTCGTCATCCCCAGCGTTCTCAAAGCTTGCGGCCACGTCGGGGATCGAATTACAGGAGAGAAAATACATGGCTTCATTTTGAAGTGTTCGTTCGAACTTGATTCGTTTGTGTCCAGTTCTTTGATTGTTATGTACTCCAAGTGTGCGAAAGTTGAGGATGCGCGCAAGGTGTTTGATGGGATGACTGTCAAAGACACTGTGGCTCTAAATGCTGTTGTTGCTGGGTATGTTCAACAGGGTGCTGCAAACGAGGCACTGGGTTTGGTGGAAAGTATGAAGTTGATGGGTTTGAAGCCAAATGTGGTAACTTGGAACTCTTTGATATCTGGGTTTTCACAGAAGGGTGACCAAGGAAGGGTGTCTGAGATTTTTAGGTTGATGATTGCAGATGGAGTGGAGCCTGATGTGGTATCATGGACTTCTGTTATATCTGGTTTTGTGCAGAACTTTCGTAATAAGGAAGCATTTGACACGTTTAAGCAAATGTTGAGTCATGGGTTCCACCCAACTTCAGCTACTATAAGCGCCCTGTTGCCTGCTTGTGCTACTGCAGCAAGAGTTAGTGTTGGGAGAGAGATTCATGGCTACGCTTTGGTGACTGGGGTGGAGGGAGATATATATGTAAGGAGTGCTCTGGTTGACATGTATGCAAAATGTGGGTTCATTTCTGAAGCGAGGAATTTGTTTAGTAGGATGCCAGAGAAGAACACAGTTACGTGGAACTCTATCATTTTTGGTTTTGCGAATCACGGGTATTGCGAGGAAGCCATTGAGCTCTTCAATCAGATGGAAAAGGAAGGGGTAGCCAAGCTGGATCATTTAACTTTCACGGCAGCTCTCACTGCATGTAGTCATGTTGGAGATTTTGAACTTGGGCAGAGGCTATTCAAGATTATGCAAGAAAAATACAGTATTGAACCACGGCTAGAGCATTATGCGTGCATGGTGGATCTTCTTGGTCGAGCAGGGAAGCTCCACGAAGCTTATTGCATGATCAAGACAATGCCTATTGAACCTGATTTATTTGTGTGGGGTGCATTGCTGGCTGCTTGTAGAAATCATAGGCATGTGGAGCTCGCGGAAGTGGCTGCTATGCATCTAATGGAATTAGAGCCTGAGAGTGCTGCGAACCCTCTTCTGCTGTCCAGCGTATATGCTGATGCTGGCAAATGGGGAAAGTTTGAGAGGGTCAAGAAAAGGATAAAGAAGGGAAAACTGAGAAAACTTCAAGGTTTGAGTTGGATAGAAAATTTATAA 1647 0.4699 MHGPLRRNATLLATNGIISRHFFRSEPESYAELIDMYARDRALHAGKKLHAHLVTNGFARFNVVASNLVSFYTCCGQLSHARKLFDKIPTTNVRRWIALIGSCARCGFYDHALAVFSEMQAVQGLTPNYVFVIPSVLKACGHVGDRITGEKIHGFILKCSFELDSFVSSSLIVMYSKCAKVEDARKVFDGMTVKDTVALNAVVAGYVQQGAANEALGLVESMKLMGLKPNVVTWNSLISGFSQKGDQGRVSEIFRLMIADGVEPDVVSWTSVISGFVQNFRNKEAFDTFKQMLSHGFHPTSATISALLPACATAARVSVGREIHGYALVTGVEGDIYVRSALVDMYAKCGFISEARNLFSRMPEKNTVTWNSIIFGFANHGYCEEAIELFNQMEKEGVAKLDHLTFTAALTACSHVGDFELGQRLFKIMQEKYSIEPRLEHYACMVDLLGRAGKLHEAYCMIKTMPIEPDLFVWGALLAACRNHRHVELAEVAAMHLMELEPESAANPLLLSSVYADAGKWGKFERVKKRIKKGKLRKLQGLSWIENL* 549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g1158 548 Pfam PPR repeat family 194 242 IPR002885 -
Gso11g1158 548 Pfam PPR repeat family 264 312 IPR002885 -
Gso11g1158 548 Pfam PPR repeat family 365 414 IPR002885 -
Gso11g1158 548 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 366 400 IPR002885 -
Gso11g1158 548 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 265 299 IPR002885 -
Gso11g1158 548 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 195 229 IPR002885 -
Gso11g1158 548 Gene3D Tetratricopeptide repeat domain 283 399 IPR011990 GO:0005515
Gso11g1158 548 Gene3D Tetratricopeptide repeat domain 400 547 IPR011990 GO:0005515
Gso11g1158 548 Gene3D Tetratricopeptide repeat domain 100 281 IPR011990 GO:0005515
Gso11g1158 548 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 241 547 - -
Gso11g1158 548 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 194 242 - -
Gso11g1158 548 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 25 193 - -
Gso11g1158 548 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 230 264 IPR002885 -
Gso11g1158 548 TIGRFAM PPR: pentatricopeptide repeat domain 267 300 IPR002885 -
Gso11g1158 548 TIGRFAM PPR: pentatricopeptide repeat domain 198 231 IPR002885 -
Gso11g1158 548 TIGRFAM PPR: pentatricopeptide repeat domain 232 266 IPR002885 -
Gso11g1158 548 TIGRFAM PPR: pentatricopeptide repeat domain 98 128 IPR002885 -
Gso11g1158 548 TIGRFAM PPR: pentatricopeptide repeat domain 368 398 IPR002885 -
Gso11g1158 548 Pfam PPR repeat 96 120 IPR002885 -
Gso11g1158 548 Pfam PPR repeat 169 192 IPR002885 -
Gso11g1158 548 Pfam PPR repeat 442 465 IPR002885 -
Gso11g1158 548 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 335 365 IPR002885 -
Gso11g1158 548 PANTHER OS03G0271300 PROTEIN 194 242 - -
Gso11g1158 548 PANTHER OS03G0271300 PROTEIN 241 547 - -
Gso11g1158 548 PANTHER OS03G0271300 PROTEIN 25 193 - -
Gso11g1158 548 Pfam E motif 484 546 IPR046848 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g1158 Gso-Chr11 10377405 10379459 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g1158 76 546 Glycoside Hydrolase AT3G49170 33.072 2.86e-85 280
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g1158 - - gmx:100790576 1074.31