Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Gso11g1148 | ATGCGGCATTGGAAACAATTGGGAGAGGTGCTGGTGGCAGCTTCTATCACCAACACGCTATCCCACTCTCACTCTGCAACTATCAACCTCCCTCCTAACCTCGCTCTCGGACTCACCCAACCCCTCATTCTAAAAATCCTCTCAAACCCCGCGCATCACGCATCCCACAAGCTTCGATTCTTCGAGTGGTCTCGCTCCCACCACTGCCCTTCCCCCGCCGCGTACTCCGTCATCCTCCGCACCCTCTCCCGCGAGGGTTTCTACTCCGACATCCCCTCCCTCCTCCATTCCATGACGCAAGCCGGCGTCGTTCTCGATCCCCACTCCCTCAACCACCTCCTCCGCTCCTTCATCATCTCCTCCAACTTCAATTTAGCTCTCCAATTACTAGATTACGTACAACACCTTCACCTCGACCCTAGCCCAATTTACAACTCTCTCCTCGTTGCTCTGCTTGAAAAAAACCAACTCACTCTCGCGTTATCCATCTTCTTCAAGCTCCTTGGTGCTGTTGATTCGAAATCCATCACCGCGTGCAACCAGTTGTTGGTTGCTCTTAGAAAAGCAGACATGAGGGTGGAGTTTGAGCAAGTGTTCCAGAGGTTGAGGGAGAAGAGAGGGTTCTCATTTGACACATGGGGCTACAATGTGTGTATCCACGCCTTTGGTTGTTGGGGTGATTTGGCTACTTGCTTTGCACTTTTTAAGGAGATGAAGGGTGGTAATAAGGGGTTCGTTGCTCCTGATTTGTGCACCTACAACAGCCTCATCACCGCACTTTGCAGGCTTGGCAAGGTGGATGATGCGATCACTGTGTACGAGGAGCTCAATGGCTCAGCCCACCAACCCGATCGCTTCACTTACACCAACCTTATTCAAGCCTGTTCCAAGACTTACAGAATGGAGGATGCCATCAGGATTTTTAACCAGATGCAGAGCAATGGATTCCGCCCGGATACACTTGCTTATAACTCTCTGCTGGATGGACATTTTAAGGCCACAAAGGTTATGGAAGCCTGCCAGCTGTTTGAGAAAATGGTTCAAGAAGGTGTGAGACCGTCATGCTGGACTTATAATATTCTCATTCATGGATTGTTTAGGAATGGCAGGGCGGAAGCTGCTTATACTATGTTTTGTGACCTCAAGAAGAAAGGCCAATTTGTGGATGGGATTACTTACAGCATCGTTGTGTTGCAGCTTTGTAAGGAGGGCCAACTGGAGGAGGCGCTGCAGTTGGTGGAAGAAATGGAAAGCAGAGGTTTTGTTGTTGATCTTGTCACCATAACATCGCTCCTGATTAGCATTCATAGACACGGTCGCTGGGATTGGACAGACCGGCTTATGAAGCATATCAGGGAAGGTGATCTGGCACTTTCCGTTCTCAAGTGGAAAGCTGGAATGGAAGCTTCTATGAAGAACCCGCCCGGCAAGAAAAAGGATTACTCGCCCTTGTTCCCTTCCAAAGGAGATTTTATTGACATCATCAACTTCATGACCTGTGCCCAGGATACCACCAACATTAATGACGGGGAGGAAAATTCCTGCAATGAAATTGACGAGTGGTCATCATCACCGCACATGGATAAATTGGCCAATCAAGTGAGCTCCACTGGCTATTCTTCCCAGATGTTTACTCCTTCTCGTGGACAAAGAGTTCAAGAAAAAGGGCCGGATTCTTTTGATGTTGATATGGTGAATACTTTCTTGTCTATATTTTTGGCCAAGGGAAAGTTGAGCTTGGCTTGCAAATTGTTTGAGATTTTCAGTGATGCAGGTGTGGATCCTGTGAGCTATACTTATAATTCTATCATGAGCTCTTTTGTCAAAAAGGGCTATTTCGCTGAAGCTTGGGCTATTCTAACTGAAATGGGAGAAAAATTTTGCCCCACTGATATAGCCACATACAATATGATAATTCAAGGTTTAGGAAAGATGGGAAGAGCTGATCTAGCCAGTGCTGTTCTTGATAGGCTACTGAGGCAGGGTGGTTATCTTGACATAGTTATGTATAACACTCTCATTAATGCTTTGGGGAAGGCAAGCCGAATTGATGAGGTGAATAAGCTTTTTGAGCAAATGAGGAGCAGTGGGATAAATCCTGATGTTGTCACTTATAATACATTGATTGAAGTTCACAGTAAGGCAGGGCGATTGAAGGATGCTTATAAGTTCTTAAAAATGATGCTGGATGCTGGATGCAGCCCTAACCATGTTACAGACACCACTTTAGATTATCTAGGGAGGGAAATTGATAAATTGAGGTACCAAAGGGCATCGATTTTGAGTGAAAAAGATGATCCTTCTTGA | 2307 | 0.4642 | MRHWKQLGEVLVAASITNTLSHSHSATINLPPNLALGLTQPLILKILSNPAHHASHKLRFFEWSRSHHCPSPAAYSVILRTLSREGFYSDIPSLLHSMTQAGVVLDPHSLNHLLRSFIISSNFNLALQLLDYVQHLHLDPSPIYNSLLVALLEKNQLTLALSIFFKLLGAVDSKSITACNQLLVALRKADMRVEFEQVFQRLREKRGFSFDTWGYNVCIHAFGCWGDLATCFALFKEMKGGNKGFVAPDLCTYNSLITALCRLGKVDDAITVYEELNGSAHQPDRFTYTNLIQACSKTYRMEDAIRIFNQMQSNGFRPDTLAYNSLLDGHFKATKVMEACQLFEKMVQEGVRPSCWTYNILIHGLFRNGRAEAAYTMFCDLKKKGQFVDGITYSIVVLQLCKEGQLEEALQLVEEMESRGFVVDLVTITSLLISIHRHGRWDWTDRLMKHIREGDLALSVLKWKAGMEASMKNPPGKKKDYSPLFPSKGDFIDIINFMTCAQDTTNINDGEENSCNEIDEWSSSPHMDKLANQVSSTGYSSQMFTPSRGQRVQEKGPDSFDVDMVNTFLSIFLAKGKLSLACKLFEIFSDAGVDPVSYTYNSIMSSFVKKGYFAEAWAILTEMGEKFCPTDIATYNMIIQGLGKMGRADLASAVLDRLLRQGGYLDIVMYNTLINALGKASRIDEVNKLFEQMRSSGINPDVVTYNTLIEVHSKAGRLKDAYKFLKMMLDAGCSPNHVTDTTLDYLGREIDKLRYQRASILSEKDDPS* | 769 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Gso11g1148 | 768 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 596 | 630 | IPR002885 | - | |
| Gso11g1148 | 768 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 389 | 423 | IPR002885 | - | |
| Gso11g1148 | 768 | Pfam | PPR repeat family | 318 | 366 | IPR002885 | - | |
| Gso11g1148 | 768 | Pfam | PPR repeat family | 597 | 643 | IPR002885 | - | |
| Gso11g1148 | 768 | Pfam | PPR repeat family | 700 | 743 | IPR002885 | - | |
| Gso11g1148 | 768 | Pfam | PPR repeat family | 248 | 296 | IPR002885 | - | |
| Gso11g1148 | 768 | Pfam | PPR repeat | 385 | 417 | IPR002885 | - | |
| Gso11g1148 | 768 | Gene3D | Tetratricopeptide repeat domain | 296 | 504 | IPR011990 | GO:0005515 | |
| Gso11g1148 | 768 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 284 | 318 | IPR002885 | - | |
| Gso11g1148 | 768 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 354 | 388 | IPR002885 | - | |
| Gso11g1148 | 768 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 249 | 283 | IPR002885 | - | |
| Gso11g1148 | 768 | Gene3D | Tetratricopeptide repeat domain | 42 | 168 | IPR011990 | GO:0005515 | |
| Gso11g1148 | 768 | Gene3D | Tetratricopeptide repeat domain | 169 | 295 | IPR011990 | GO:0005515 | |
| Gso11g1148 | 768 | Pfam | Pentatricopeptide repeat domain | 93 | 148 | IPR002885 | - | |
| Gso11g1148 | 768 | PANTHER | DEFECTIVE KERNEL35 | 3 | 763 | - | - | |
| Gso11g1148 | 768 | TIGRFAM | PPR: pentatricopeptide repeat domain | 598 | 629 | IPR002885 | - | |
| Gso11g1148 | 768 | TIGRFAM | PPR: pentatricopeptide repeat domain | 251 | 276 | IPR002885 | - | |
| Gso11g1148 | 768 | TIGRFAM | PPR: pentatricopeptide repeat domain | 286 | 320 | IPR002885 | - | |
| Gso11g1148 | 768 | TIGRFAM | PPR: pentatricopeptide repeat domain | 391 | 424 | IPR002885 | - | |
| Gso11g1148 | 768 | TIGRFAM | PPR: pentatricopeptide repeat domain | 357 | 385 | IPR002885 | - | |
| Gso11g1148 | 768 | TIGRFAM | PPR: pentatricopeptide repeat domain | 634 | 666 | IPR002885 | - | |
| Gso11g1148 | 768 | TIGRFAM | PPR: pentatricopeptide repeat domain | 322 | 355 | IPR002885 | - | |
| Gso11g1148 | 768 | TIGRFAM | PPR: pentatricopeptide repeat domain | 703 | 736 | IPR002885 | - | |
| Gso11g1148 | 768 | TIGRFAM | PPR: pentatricopeptide repeat domain | 668 | 702 | IPR002885 | - | |
| Gso11g1148 | 768 | Pfam | PPR repeat | 215 | 240 | IPR002885 | - | |
| Gso11g1148 | 768 | Pfam | PPR repeat | 668 | 698 | IPR002885 | - | |
| Gso11g1148 | 768 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 701 | 735 | IPR002885 | - | |
| Gso11g1148 | 768 | PANTHER | PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN | 3 | 763 | - | - | |
| Gso11g1148 | 768 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 319 | 353 | IPR002885 | - | |
| Gso11g1148 | 768 | SUPERFAMILY | TPR-like | 123 | 731 | IPR011990 | GO:0005515 | |
| Gso11g1148 | 768 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 666 | 700 | IPR002885 | - | |
| Gso11g1148 | 768 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 631 | 665 | IPR002885 | - | |
| Gso11g1148 | 768 | Gene3D | Tetratricopeptide repeat domain | 626 | 695 | IPR011990 | GO:0005515 | |
| Gso11g1148 | 768 | Gene3D | Tetratricopeptide repeat domain | 696 | 748 | IPR011990 | GO:0005515 | |
| Gso11g1148 | 768 | Gene3D | Tetratricopeptide repeat domain | 521 | 625 | IPR011990 | GO:0005515 |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Gso11g1148 | 229 | 743 | Glycosyltransferase | AT1G05670 | 22.394 | 1.34e-34 | 139 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Gso11g1148 | - | - | gmx:100788992 | 1550.8 |