Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g1146 ATGGACATGATCGCTGTTCTCACTGAACTTGAGCGCCAAGAACAAGTTTCTCTCGCTCTCATGATGTTTAAGGTGATGCAAAAGCAAGATTGGTACAAGCCTGATGCATACCTCTATAAGGACTTGATCATTGCATTGGCCAGGGCTAAGAAAATGGATGAAGTATTGCAATTGTGGGAAAGCATGAGAAAGGAAAATCTGTTCCCTGATTCCCAGACTTATACTGAAGTCATAAGAGGCTTCTTGAACTATGGATCTCCCGCGGATGCAATGAATATATATGAGGACATGAAGAATTCTCCGGATCCGCCAGAGGAGTTGCCATTCAGGATTCTGTTGAAAGGACTTCTTCCGCATCCTCTTTTGAGAAACAAAGTGAAACAAGATTTCGAGGAGATTTTTCCTGATTCAAGTATCTATGATCCACCACAAGAGATATTTGGAGCCCGCTGA 453 0.426 MDMIAVLTELERQEQVSLALMMFKVMQKQDWYKPDAYLYKDLIIALARAKKMDEVLQLWESMRKENLFPDSQTYTEVIRGFLNYGSPADAMNIYEDMKNSPDPPEELPFRILLKGLLPHPLLRNKVKQDFEEIFPDSSIYDPPQEIFGAR* 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g1146 150 Pfam PPR repeat family 34 82 IPR002885 -
Gso11g1146 150 Gene3D Tetratricopeptide repeat domain 1 150 IPR011990 GO:0005515
Gso11g1146 150 PANTHER PROTEIN THYLAKOID ASSEMBLY 8-LIKE, CHLOROPLASTIC 1 149 IPR044795 -
Gso11g1146 150 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 70 104 IPR002885 -
Gso11g1146 150 PANTHER PROTEIN THYLAKOID ASSEMBLY 8-LIKE, CHLOROPLASTIC 1 149 - -
Gso11g1146 150 TIGRFAM PPR: pentatricopeptide repeat domain 73 99 IPR002885 -
Gso11g1146 150 TIGRFAM PPR: pentatricopeptide repeat domain 39 71 IPR002885 -
Gso11g1146 150 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 35 69 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g1146 Gso-Chr11 10310763 10313279 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g1146 1 147 Miscellaneous Gene Families AT4G11690 23.810 2.77e-06 43.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g1146 - - gmx:100798492 301.982
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso11g1146 11 10310763 10313279 Gso11g1146 11 10310763 10313279 ECH
Gso12g0485 12 4314332 4316205 Gso11g1146 11 10310763 10313279 GST