Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g1134 ATGCTGAGGGTGGCGCTGCGATGGAACTCGATTTGGAGGCCAATGGCTTCTCTGCCACTAACTCCCTTCACATGCCAAAATCTCCACACGCTAAACCCTAGGCCTCGATGTCGCACCTTCAAGCTTTTTTGTCGACCTTCTTCTTCCGCCGTCGCGCACACCTCGCCTCCTCTCTCCGGCGACCTGGACCGCTACCTCCGCTGCTCCATGCCGCAGAACTCGCCGCTCCGAGTCGCGGTTCTTGTCAGCGGAGGCGTCGATAGCAGCGTCGCTCTCCGGCTGCTCCACGCCGCTGGCCACTCCTGCACCGCTTTCTACCTCAAGATATGGTTCCAAGAAGATTTCGAGAACTTTTGGTCTGAGTGCCCCTGGGAAGACGATTTGAAGTATGCTAAAGATGTTTGTAATCAGGTTGATGTACCGTTAGAAGTTGTTCATTTAACCGATGAATACTGGAACAATGTGGTTTCTTACCTCATTGAAGAGTATAGTAGTGGCCGAACCCCTAACCCTGATGTTCTGTGCAATACAAGAATTAAGTTTGGTGCATTCTTGGATGCGATTGGTGGCATGGGTTTTGACTATGTTGCCTCTGGGCATTATGCAAATGTTATCCACCCATGTTCTGATCGGAGGGATGAACCTTCTGTTCTGGAACTATCACAAGACATGGTAAAGGATCAAACATACTTCCTTTCACACCTCTCACAATCCCAGCTGAAGCAACTTCTTTTTCCGCTTGGTTGTATTCCCAAGGATGAAGTCCGCAAGCTTGCCACAAAATTTGATCTACCAAATAAGGATAGAAAGGATTCCCAAGGAATATGCTTTTTGGGCAAGATAAGATTCAGTGAATTTGTTGCAAGACATATTGGGGAGAGAGAAGGTGTCATACTAGAAGCTGAGACAGGAGATTTCCTTGGCAAACATCGAGGATTTTGGTTTTATACTATTGGTCAGCGCCAGGGTCTACGGCTACCTGGAGGCCCATGGTATGTTGTTGAGAAGGATGTTAAAAACAATGTAGTTTTTGTGTCAAGAAATTACTTTTCCTTTGACAAAAGAAGGCGTGTATTCCGTGTTGGCTCTTTTAAATGGCTTAGCGGGTTGCCCCCAGGCCAGACAACTCAGCTCCAATGCAAGGTGAGACATGGTCCTGGATTTTATGATTGTAGCTTACAAATGGAAGTCGAAGCTGATGGCCAATGTCACTCTGCTGTTGTCCGCATATCTGAAGATGATCAAGGCCTAGCAGCTGGGCAGTTTGCGGCATTCTATGAGGGAAGAACATGCATAGGTTCTGGTGTGATTTTGGAGTTCTGGGATGATCAGAGTTTTCCAGTTTGTACAAAAGCTTTAGAAATTGCTAGAATGGAAGATAAATCAAAGATTGGGAATCCGGTAAAAATAAAAGTTAAACCAGATAACCCGCAAGAAGTGTGTGATTCTGCAGAGTTAGCAAGTAAAACATCACAAGGGAATAAGAAATTAAAGAGTTGCTGGCACTGA 1509 0.4612 MLRVALRWNSIWRPMASLPLTPFTCQNLHTLNPRPRCRTFKLFCRPSSSAVAHTSPPLSGDLDRYLRCSMPQNSPLRVAVLVSGGVDSSVALRLLHAAGHSCTAFYLKIWFQEDFENFWSECPWEDDLKYAKDVCNQVDVPLEVVHLTDEYWNNVVSYLIEEYSSGRTPNPDVLCNTRIKFGAFLDAIGGMGFDYVASGHYANVIHPCSDRRDEPSVLELSQDMVKDQTYFLSHLSQSQLKQLLFPLGCIPKDEVRKLATKFDLPNKDRKDSQGICFLGKIRFSEFVARHIGEREGVILEAETGDFLGKHRGFWFYTIGQRQGLRLPGGPWYVVEKDVKNNVVFVSRNYFSFDKRRRVFRVGSFKWLSGLPPGQTTQLQCKVRHGPGFYDCSLQMEVEADGQCHSAVVRISEDDQGLAAGQFAAFYEGRTCIGSGVILEFWDDQSFPVCTKALEIARMEDKSKIGNPVKIKVKPDNPQEVCDSAELASKTSQGNKKLKSCWH* 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g1134 502 Gene3D HUPs 63 289 IPR014729 -
Gso11g1134 502 TIGRFAM trmU: tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase 77 437 IPR004506 GO:0008033|GO:0016740
Gso11g1134 502 Gene3D Translation factors 356 446 - -
Gso11g1134 502 Gene3D - 290 349 IPR023382 GO:0016783
Gso11g1134 502 Pfam Aminomethyltransferase beta-barrel domain 357 437 IPR046885 -
Gso11g1134 502 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 77 322 - -
Gso11g1134 502 CDD tRNA_Me_trans 77 437 IPR004506 GO:0008033|GO:0016740
Gso11g1134 502 Pfam tRNA methyl transferase PRC-barrel domain 285 347 IPR046884 -
Gso11g1134 502 PANTHER - 63 470 - -
Gso11g1134 502 Hamap tRNA-specific 2-thiouridylase MnmA [mnmA]. 76 438 IPR004506 GO:0008033|GO:0016740
Gso11g1134 502 Pfam tRNA methyl transferase HUP domain 77 280 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g1134 K21027 - gmx:100785275 1040.02
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso11g1134 11 10220174 10224292 Gso11g1134 11 10220174 10224292 ECH