LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gso11g1105	ATGGCATTCAAGGGCTATTTCCTTCTCGGCCTCGTTACTCTTGTTCTTGTTAAATCTTCCAAAGTTACATGCGAAGAAGAATCAGTTAATACAGTTTCACCCATTATTGACATTTCACTCAATCGGAAGAGTTTCCCAGAAGGGTTCATATTTGGGGCGGGATCTTCCTCGTACCAGTTCGAAGGGGCAGCAAAGGAAGGTGGTAGAGGACCAAGTGTATGGGATACCTTCACCCATAATTATCCAGGAAAGATCATGGATAGAAGCAACGGAGACATGGCAATTGACTCATATCACAACTACAAGAAAGATGTTGGGATGATGAAGGATATGAATTTAGATTCATATAGATTTTCCATATCTTGGTCAAGAATTCTCCCAAAAGGAAAGCTAAGTGGAGGTATCAATCAAGAAGGAATCAACTATTACAACAACCTTATCAATGAGCTACTAGCTAATGGTATACAACCACTTGTAACTCTCTTTCATTGGGATCTTCCTCAAGCTTTAGAAGATGAGTATGGTGGCTTTTTAAGTCCGCGCATAGTGAAAGATTTTCGAGACTATGCAGAACTTTGCTTCAGGGAATTTGGCGATAGGGTGAAGTATTGGGTTACATTGAATGAGCCATGGAGTTACAGCCAAAATGGCTATGCAAATGGGCGAATGGCACCTGGCCGTTGTTCTGCATGGATGAATCTGAATTGCACTGGTGGTGATTCTTCAACGGAGCCTTACTTGGTTACACATCACCAACTTCTTGCTCATGCAGCTGCTGTTCGTGTGTACAAGACCAAGTACCAGGCATCTCAAAATGGTGTGATAGGCATAACCTTGGTAGCTAATTGGTTTTTGCCGCTCAGAGATACCAAATCTGATCAAAAGGCTACAGAAAGAGCAATTGACTTCATGTATGGATGGTTTATGGATCCATTAACATCTGGAGACTATCCCAACAGCATGCGATCACTTGTGAGGACAAGATTACCAAAGTTTACTGCAGAGCAATCCAAACTACTTATTGGTTCATTTGATTTTATTGGCCTAAACTATTACTCTACAACATATGCCTCTGACGCACCTGATCTAAGCGAAGCCCGTCCTAGCTACTTAACAGATTCTCTTGTCACTCCTGCATATGAACGTGATGGGAAACCTATTGGAATAAAGATTGCTTCTGATTGGTTATATGTTTATCCAAGAGGAATTCGTGACCTTTTATTATATACCAAAGAAAAGTACAATAATCCTTTGATTTACATCACTGAAAATGGTATAAATGAGTATAATGAACCAACATTATCACTTGAGGAATCTCTTATAGATACCTTTAGAATTGATTATCATTACCGTCATCTCTTTTATCTTCAATCCGCAATTAGGAATGGCGCAAATGTGAAGGGATATTATGTATGGTCTTTGTTCGACAATTTTGAATGGTCTTCAGGTTATACATCACGTTTTGGGATGATCTTCGTGGATTACAAAAATGGTTTGAAGAGATACCAAAAGCTTTCAGCGCAATGGTTCAAGAATTTTCTCAAGAAAGAAAGAAGACTTTATAGCTCTAGTAAATAA	1578	0.3929	MAFKGYFLLGLVTLVLVKSSKVTCEEESVNTVSPIIDISLNRKSFPEGFIFGAGSSSYQFEGAAKEGGRGPSVWDTFTHNYPGKIMDRSNGDMAIDSYHNYKKDVGMMKDMNLDSYRFSISWSRILPKGKLSGGINQEGINYYNNLINELLANGIQPLVTLFHWDLPQALEDEYGGFLSPRIVKDFRDYAELCFREFGDRVKYWVTLNEPWSYSQNGYANGRMAPGRCSAWMNLNCTGGDSSTEPYLVTHHQLLAHAAAVRVYKTKYQASQNGVIGITLVANWFLPLRDTKSDQKATERAIDFMYGWFMDPLTSGDYPNSMRSLVRTRLPKFTAEQSKLLIGSFDFIGLNYYSTTYASDAPDLSEARPSYLTDSLVTPAYERDGKPIGIKIASDWLYVYPRGIRDLLLYTKEKYNNPLIYITENGINEYNEPTLSLEESLIDTFRIDYHYRHLFYLQSAIRNGANVKGYYVWSLFDNFEWSSGYTSRFGMIFVDYKNGLKRYQKLSAQWFKNFLKKERRLYSSSK*	526

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gso11g1105	525	PRINTS	Glycosyl hydrolase family 1 signature	343	357	IPR001360	GO:0004553\|GO:0005975
	Gso11g1105	525	PRINTS	Glycosyl hydrolase family 1 signature	419	427	IPR001360	GO:0004553\|GO:0005975
	Gso11g1105	525	PRINTS	Glycosyl hydrolase family 1 signature	442	453	IPR001360	GO:0004553\|GO:0005975
	Gso11g1105	525	PRINTS	Glycosyl hydrolase family 1 signature	463	480	IPR001360	GO:0004553\|GO:0005975
	Gso11g1105	525	PRINTS	Glycosyl hydrolase family 1 signature	487	499	IPR001360	GO:0004553\|GO:0005975
	Gso11g1105	525	Gene3D	Glycosidases	32	516	-	-
	Gso11g1105	525	PANTHER	GLYCOSIDE HYDROLASE FAMILY 1 PROTEIN	3	521	-	-
	Gso11g1105	525	PANTHER	GLYCOSYL HYDROLASE	3	521	IPR001360	GO:0004553\|GO:0005975
	Gso11g1105	525	Pfam	Glycosyl hydrolase family 1	42	517	IPR001360	GO:0004553\|GO:0005975
	Gso11g1105	525	ProSitePatterns	Glycosyl hydrolases family 1 N-terminal signature.	49	63	IPR033132	-
	Gso11g1105	525	SUPERFAMILY	(Trans)glycosidases	40	515	IPR017853	-
	Gso11g1105	525	ProSitePatterns	Glycosyl hydrolases family 1 active site.	419	427	IPR018120	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gso11g1105	Gso-Chr11	9894777	9897502	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gso11g1105	6	519	Glycoside Hydrolase	AT5G44640	54.175	0.0	585

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gso11g1105	-		K01188	gmx:100777247	1065.06