Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g1040 ATGGCAATTAGATCCCTGAGAGTGAGAGATGCTATGGTATACCTTGACCATGTCCAAGCAATAAAATCTGGTTTGGTATCAAGCATTTTCACTTGTAATCAACTCATTCACCTTTATTCCAACCATGGCCTTTTACAAGAGGCCCACAAACTGTTCGATGAAATGCCCCATCCAAACGTATTCTCTTGGAATGCCATAATCATGGCTTACATAAAAGCACACAACTTGACTCAAGCGCGAGCCCTTTTTGACTCTGCCTCTCACAGAGATTTGGTTTCTTATAATTCCCTGTTGTCTGCTTATGTTGGTTCAGATGGGTACGAGACTGAGGCACTTGATTTGTTTACTAGAATGCAATCTGCACGTGACACAATTGGGATTGATGAGATCACTCTCACAAACATGCTTAACCTTGCTGCCAAACTACGTGTGCTGTGTTATGGAAAACAGATGCATTCGTATATGGTGAAAACTGCAAATGATTTAAGTAAGTTTGCTTTGAGTTCTCTCATAGACATGTACTCCAAATGTGGCTGCTTTCAAGAAGCATGCAATTTATTTGGCAGTTGTGATGAGATGGTGGACTTGGTTTCTAAGAATGCAATGGTTGCAGCTTGTTGTAGGGAAGGAAAGATGGACATGGCCTTAAATGTATTTTGGAAAAATCCTGAATTAAAGGATACTGTATCTTGGAACACATTGATTGCAGGATACTCCCAGAATGGCTATATGGAGAAATCACTTACCTTTTTTGTTGAGATGATTGAAAATGGTATTGATTTCAACGAACACACTTTAGCAAGTGTTTTGAATGCCTGCTCTGCTCTAAAATGTTCAAAACTTGGCAAGTCTGTCCATGCTTGGGTGTTAAAAAAGGGTTATAGTTCAAATCAATTTATTAGCAGTGGCGTTGTTGACTTCTACTCTAAGTGCGGGAATATAAGATATGCAGAGTTAGTCTATGCAAAAATTGGGATTAAAAGTCCATTTGCAGTTGCGTCGTTGATTGCAGCCTACTCATCTCAGGGTAACATGACAGAAGCCCAAAGGCTTTTTGATTCACTGTTGGAAAGAAACTCTGTTGTATGGACAGCTCTATGTTCTGGCTATGTCAAATCACAACAATGTGAAGCAGTCTTCAAACTTTTCAGAGAGTTTAGAACTAAAGAAGCACTAGTTCCTGATGCAATGATCATTGTCAGTATTCTTGGTGCCTGTGCAATACAGGCTGACCTTAGTTTGGGAAAGCAAATTCATGCTTACATCTTGAGAATGAGATTTAAGGTGGATAAGAAATTACTGAGTTCTTTGGTTGATATGTACTCAAAATGTGGGAATGTTGCATATGCCGAGAAACTCTTCAGACTAGTTACTGATAGTGATAGAGATGCAATCTTATATAATGTCATAATAGCTGGTTATGCTCATCATGGTTTTGAAAATAAAGCAATTGAGCTTTTTCAGGAAATGTTGAATAAAAGTGTCAAGCCCGACGCAGTCACTTTTGTTGCACTTCTATCAGCTTGTCGACACCGTGGATTAGTAGAACTAGGAGAGCAATTTTTTATGTCCATGGAACATTACAACGTATTGCCTGAGATTTACCACTATGCATGTATGGTGGATATGTATGGAAGGGCTAATCAACTAGAAAAGGCAGTAGAGTTCATGAGGAAGATTCCCATAAAGATAGATGCTACAATCTGGGGAGCATTTCTTAACGCTTGTCAGATGAGCAGCGATGCAGCACTTGTCAAACAGGCAGAAGAGGAACTATTGAAAGTTGAGGCAGATAATGGGTCCAGATATGTGCAGTTGGCCAATGCGTATGCTGCCAAAGGGAAATGGGATGAGATGGGAAGAATAAGAAAGAAAATGAGAGGACACGAGGCTAAGAAGCTTGCTGGTTGCAGTTGGATATATGTGGAAAATGGCATTCATGTATTTACTTCTGGTGATAGATCCCATTCAAAAGCAGAAGCAGTATATTCAACTCTGACATGCTTGAATGGGAAACTGTATTTATCTTTCAAAGAACAGAAGCAACTTTATGAAATTCAAAGTGATGTTGATTGTTGA 2079 0.393 MAIRSLRVRDAMVYLDHVQAIKSGLVSSIFTCNQLIHLYSNHGLLQEAHKLFDEMPHPNVFSWNAIIMAYIKAHNLTQARALFDSASHRDLVSYNSLLSAYVGSDGYETEALDLFTRMQSARDTIGIDEITLTNMLNLAAKLRVLCYGKQMHSYMVKTANDLSKFALSSLIDMYSKCGCFQEACNLFGSCDEMVDLVSKNAMVAACCREGKMDMALNVFWKNPELKDTVSWNTLIAGYSQNGYMEKSLTFFVEMIENGIDFNEHTLASVLNACSALKCSKLGKSVHAWVLKKGYSSNQFISSGVVDFYSKCGNIRYAELVYAKIGIKSPFAVASLIAAYSSQGNMTEAQRLFDSLLERNSVVWTALCSGYVKSQQCEAVFKLFREFRTKEALVPDAMIIVSILGACAIQADLSLGKQIHAYILRMRFKVDKKLLSSLVDMYSKCGNVAYAEKLFRLVTDSDRDAILYNVIIAGYAHHGFENKAIELFQEMLNKSVKPDAVTFVALLSACRHRGLVELGEQFFMSMEHYNVLPEIYHYACMVDMYGRANQLEKAVEFMRKIPIKIDATIWGAFLNACQMSSDAALVKQAEEELLKVEADNGSRYVQLANAYAAKGKWDEMGRIRKKMRGHEAKKLAGCSWIYVENGIHVFTSGDRSHSKAEAVYSTLTCLNGKLYLSFKEQKQLYEIQSDVDC* 693
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g1040 692 Gene3D Tetratricopeptide repeat domain 147 278 IPR011990 GO:0005515
Gso11g1040 692 Gene3D Tetratricopeptide repeat domain 4 146 IPR011990 GO:0005515
Gso11g1040 692 Pfam E motif 581 640 IPR046848 -
Gso11g1040 692 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN-RELATED 332 402 - -
Gso11g1040 692 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN-RELATED 35 322 - -
Gso11g1040 692 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN-RELATED 396 667 - -
Gso11g1040 692 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 498 532 IPR002885 -
Gso11g1040 692 Pfam PPR repeat family 463 509 IPR002885 -
Gso11g1040 692 Pfam PPR repeat family 226 273 IPR002885 -
Gso11g1040 692 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 227 261 IPR002885 -
Gso11g1040 692 Gene3D Tetratricopeptide repeat domain 279 462 IPR011990 GO:0005515
Gso11g1040 692 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 463 497 IPR002885 -
Gso11g1040 692 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 396 667 - -
Gso11g1040 692 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 35 322 - -
Gso11g1040 692 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 332 402 - -
Gso11g1040 692 TIGRFAM PPR: pentatricopeptide repeat domain 229 261 IPR002885 -
Gso11g1040 692 TIGRFAM PPR: pentatricopeptide repeat domain 466 499 IPR002885 -
Gso11g1040 692 TIGRFAM PPR: pentatricopeptide repeat domain 30 55 IPR002885 -
Gso11g1040 692 Pfam PPR repeat 168 188 IPR002885 -
Gso11g1040 692 Pfam PPR repeat 435 456 IPR002885 -
Gso11g1040 692 Pfam PPR repeat 361 388 IPR002885 -
Gso11g1040 692 Pfam PPR repeat 30 55 IPR002885 -
Gso11g1040 692 Pfam PPR repeat 198 219 IPR002885 -
Gso11g1040 692 Pfam PPR repeat 92 120 IPR002885 -
Gso11g1040 692 Pfam PPR repeat 61 84 IPR002885 -
Gso11g1040 692 Pfam PPR repeat 334 359 IPR002885 -
Gso11g1040 692 Pfam PPR repeat 536 559 IPR002885 -
Gso11g1040 692 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 90 121 IPR002885 -
Gso11g1040 692 Gene3D Tetratricopeptide repeat domain 463 668 IPR011990 GO:0005515
Gso11g1040 692 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 28 62 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g1040 Gso-Chr11 9308059 9310604 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g1040 65 666 Glycoside Hydrolase AT3G49170 30.693 3.17e-90 298
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g1040 - - gmx:100803987 1382.85