Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g1020 ATGACTGAGGGAAAGCTAGTTGAAGCTGCAGAAGCTCATAAGACACTTCAGGATTTCGATCCTCCAAAGAAGCGCAAAAGGAACAAGTATGCTTTTGCTTGTGCTATGCTGGCCTCCATGACTTCCATCTTGCTTGGTTATGATATTGGAGTGATGAGTGGAGCAGCCATATACATAAAAAGGGACCTGAAAGTCTCGGACGAGCAAATCGAGATCCTGCTCGGAATCATCAACCTATACTCTCTGATAGGCTCATGTCTCGCCGGCAGAACCTCCGACTGGATAGGTCGCCGTTACACGATTGTTTTCGCCGGCGCCATCTTCTTTGTCGGAGCACTTCTCATGGGTTTCTCCCCCAATTATTCCTTTCTCATGTTTGGCCGTTTCGTCGCTGGCATTGGCATCGGCTACGCCCTCATGATAGCCCCCGTCTACACCGCCGAGGTCTCCCCGGCCTCCTCTCGTGGCTTCCTCACTTCCTTCCCTGAGGTATTTATTAATGGAGGGATATTAATTGGATACATATCAAACTATGCATTTTCGAAGCTGACACTAAAGGTGGGATGGCGAATGATGCTTGGAGTTGGTGCAATACCTTCGGTACTCCTAACAGTAGGAGTGTTGGCGATGCCGGAGTCCCCAAGGTGGCTTGTGATGAGGGGTCGTTTGGGAGAGGCAAGAAAAGTGCTTAACAAAACCTCAGACAGCAAGGAAGAGGCCCAACTAAGGCTAGCGGAAATCAAACAAGCCGCAGGGATCCCCGAGAGTTGCAACGACGACGTCGTTCAGGTAAATAAACAAAGCAACGGTGAAGGTGTATGGAAAGAGCTCTTCCTCTATCCAACGCCCGCAATTCGTCACATCGTAATCGCTGCCCTTGGTATTCACTTCTTCCAACAAGCGTCGGGCGTAGACGCCGTCGTTTTGTACAGCCCCAGGATCTTCGAAAAGGCTGGGATTACAAACGACACGCATAAGCTTCTTGCAACCGTGGCCGTTGGATTCGTTAAGACCGTGTTCATCTTGGCGGCTACGTTTACGTTGGACCGCGTGGGTCGTCGTCCGTTGTTATTGTCTAGTGTCGGCGGCATGGTGCTCTCGCTTCTCACGCTTGCGATCAGCCTCACTGTTATTGATCATTCGGAGAGGAAATTAATGTGGGCCGTTGGATCGAGCATAGCCATGGTGTTGGCTTACGTGGCCACGTTCTCCATCGGTGCGGGTCCCATCACGTGGGTCTATAGTTCTGAGATCTTCCCGTTGAGGCTGCGGGCGCAGGGTGCGGCCGCGGGAGTTGCGGTGAATAGGACCACTAGCGCGGTTGTCTCAATGACTTTTCTGTCCCTCACTAGAGCCATCACTATTGGTGGAGCTTTCTTCCTTTATTGTGGCATTGCTACTGTTGGGTGGATATTCTTTTACACCGTCTTGCCTGAGACCCGGGGAAAAACGCTCGAAGACATGGAAGGGTCTTTTGGTACTTTTAGGTCCAAATCCAACGCCAGCAAGGCTGTAGAAAATGAGAATGGGCAAGTAGCACAAGTCCAGCTAGGAACCAATGTCCAAACTTGA 1572 0.5089 MTEGKLVEAAEAHKTLQDFDPPKKRKRNKYAFACAMLASMTSILLGYDIGVMSGAAIYIKRDLKVSDEQIEILLGIINLYSLIGSCLAGRTSDWIGRRYTIVFAGAIFFVGALLMGFSPNYSFLMFGRFVAGIGIGYALMIAPVYTAEVSPASSRGFLTSFPEVFINGGILIGYISNYAFSKLTLKVGWRMMLGVGAIPSVLLTVGVLAMPESPRWLVMRGRLGEARKVLNKTSDSKEEAQLRLAEIKQAAGIPESCNDDVVQVNKQSNGEGVWKELFLYPTPAIRHIVIAALGIHFFQQASGVDAVVLYSPRIFEKAGITNDTHKLLATVAVGFVKTVFILAATFTLDRVGRRPLLLSSVGGMVLSLLTLAISLTVIDHSERKLMWAVGSSIAMVLAYVATFSIGAGPITWVYSSEIFPLRLRAQGAAAGVAVNRTTSAVVSMTFLSLTRAITIGGAFFLYCGIATVGWIFFYTVLPETRGKTLEDMEGSFGTFRSKSNASKAVENENGQVAQVQLGTNVQT* 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g1020 523 SUPERFAMILY MFS general substrate transporter 20 489 IPR036259 -
Gso11g1020 523 Coils Coil 230 250 - -
Gso11g1020 523 PANTHER SUGAR TRANSPORTER 14 514 - -
Gso11g1020 523 PANTHER SOLUTE CARRIER FAMILY 2, FACILITATED GLUCOSE TRANSPORTER 14 514 IPR045262 GO:0015144
Gso11g1020 523 ProSiteProfiles Major facilitator superfamily (MFS) profile. 34 481 IPR020846 GO:0022857
Gso11g1020 523 Pfam Sugar (and other) transporter 35 490 IPR005828 GO:0016021|GO:0022857|GO:0055085
Gso11g1020 523 ProSitePatterns Sugar transport proteins signature 1. 88 105 IPR005829 GO:0016021|GO:0022857|GO:0055085
Gso11g1020 523 Gene3D MFS general substrate transporter like domains 23 494 IPR036259 -
Gso11g1020 523 ProSitePatterns Sugar transport proteins signature 2. 130 155 IPR005829 GO:0016021|GO:0022857|GO:0055085
Gso11g1020 523 TIGRFAM SP: MFS transporter, sugar porter (SP) family 19 487 IPR003663 GO:0016020|GO:0022857|GO:0055085
Gso11g1020 523 PRINTS Sugar transporter signature 42 52 IPR003663 GO:0016020|GO:0022857|GO:0055085
Gso11g1020 523 PRINTS Sugar transporter signature 125 144 IPR003663 GO:0016020|GO:0022857|GO:0055085
Gso11g1020 523 PRINTS Sugar transporter signature 299 309 IPR003663 GO:0016020|GO:0022857|GO:0055085
Gso11g1020 523 PRINTS Sugar transporter signature 393 414 IPR003663 GO:0016020|GO:0022857|GO:0055085
Gso11g1020 523 PRINTS Sugar transporter signature 416 428 IPR003663 GO:0016020|GO:0022857|GO:0055085
Gso11g1020 523 CDD MFS_PLT 37 488 IPR044776 GO:0005351
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g1020 Gso-Chr11 9109885 9112764 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g1020 21 522 Organic Solute Cotransporters AT3G18830 71.485 0.0 752
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g1020 - - gmx:547958 1008.05