Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g0997 ATGGTGTCTGCCTGTGTGACCTTGAAAGCCAATACCCATTTAGTAAAATCGAGAAAAGACAATACTTTTCGTCAAGATGGTGGTTTTTTGGGTGAGAGAATCAAAGGGGGTCTGAATTACAGTCCCTGGATCATTAACCAATTGGCCTCAACTTCAAGTTTGAGAACCCAGGAGAAGGTGAATAAGGCCAAACCTGGTGTTGTTTCTGCTGTTCTTACATCAAGTAACATCAAAGAATCAGTGGCCTTTCAAATGCCATCGTTTCTCAGAAGAAAGGCTGATCCAAAAAATGTTGTTTCCGTCATATTGGGAGGGGGCCCTGGAATTCAACTCTTTCCTCTTACCAAACGAGCTGCCACACCTGCTGTTCCTGTTGGTGGATGCTACAGGCTTATAGACATCCCAATGAGCAACTGCATCAACAGTGGCCTTAACAAAATATTTGTACTGACACAATTCAACTCTGCATCCCTCAACCGTCACATCTCCCGCACCTATTTTGGAAACGGAATCAACTTTGGGGATGGATGTGTGGAGGTTCTGGCGGCTACTCAAACACAAGGAGAAGCTGGAAACAACTGGTTCCAAGGAACAGCAGATGCTGTGAGGCAATTTACATGGGTATTTGAGGATGCCAAGCACGCAAACATTGAGAATGTATTGATCTTGGCCGGAGATCATCTATACCGAATGAATTACATGGACCTTGTGCAGAGTCACGTTGACAGAAATGCAGATATTACAGTATCATGTGCTGCTGTAGGTGAAAGCCGTGCATCAGATTATGGATTGGTCAAGGCAGATGCCAGAGGTCGCATCATCCAATTTTCAGAAAAACCCAACGGAGCTGATCTGAAAGCAATGCAAGTAGATACCTCTGTGCTCGGGTTGCCACTCCATGAAGCAAAAAGGTCACCATATATTGCATCTATGGGGGTTTATGTATTCAAGACAGATGTTTTACTCAGGCTTCTGAAATGGAGATATCCTACATCCAATGACTTTGGATCTGAAATCATTCCTGCAGCTGTGAGGGAAAACAATGTCCAAGCGTATTTTTTCATTGACTATTGGGAAGACATTGGAACAATAAAATCATTTTACGATGCTAACTTGGCTCTTACTGAAGAGAATCCAATGTTCAAATTTTATGACCCCAAGACACCCATTTACACATCTCCAAGATTCCTACCACCAACAAAGATTGACAAATGCCGGATTGTGGATGCAATAATCTCCCATGGATGTTTCCTGAGAGAATGCACTGTCCAACATTCCATTGTGGGCGAACGTTCACGTTTGGATTATGGTGTTGAACTCCAGGACACTGTAATGATGGGAGCTGACTATTACCAAACTGAATCCGAAATTGCTTCTCTGCTGGCAGAGGGGAAGGTTCCCATTGGGATTGGAAGGAACACAAAAATTAGGAACTGCATAATTGACAAGAATGCAAAGATCGGGAAAGATGTCATCATCATGAACAAAGATGGCGTTCAAGAAGCAGATAGACCAGAAGATGGATTTTACATTCGATCAGGAATCACAGTCATATTAGAGAAGGCAACAATAGAAGATGGCACTGTCATATAA 1593 0.4288 MVSACVTLKANTHLVKSRKDNTFRQDGGFLGERIKGGLNYSPWIINQLASTSSLRTQEKVNKAKPGVVSAVLTSSNIKESVAFQMPSFLRRKADPKNVVSVILGGGPGIQLFPLTKRAATPAVPVGGCYRLIDIPMSNCINSGLNKIFVLTQFNSASLNRHISRTYFGNGINFGDGCVEVLAATQTQGEAGNNWFQGTADAVRQFTWVFEDAKHANIENVLILAGDHLYRMNYMDLVQSHVDRNADITVSCAAVGESRASDYGLVKADARGRIIQFSEKPNGADLKAMQVDTSVLGLPLHEAKRSPYIASMGVYVFKTDVLLRLLKWRYPTSNDFGSEIIPAAVRENNVQAYFFIDYWEDIGTIKSFYDANLALTEENPMFKFYDPKTPIYTSPRFLPPTKIDKCRIVDAIISHGCFLRECTVQHSIVGERSRLDYGVELQDTVMMGADYYQTESEIASLLAEGKVPIGIGRNTKIRNCIIDKNAKIGKDVIIMNKDGVQEADRPEDGFYIRSGITVILEKATIEDGTVI* 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g0997 530 CDD LbH_G1P_AT_C 398 524 - -
Gso11g0997 530 CDD ADP_Glucose_PP 101 361 - -
Gso11g0997 530 PANTHER GLUCOSE-1-PHOSPHATE ADENYLYLTRANSFERASE LARGE SUBUNIT 3, CHLOROPLASTIC 1 530 - -
Gso11g0997 530 SUPERFAMILY Trimeric LpxA-like enzymes 392 530 IPR011004 -
Gso11g0997 530 SUPERFAMILY Nucleotide-diphospho-sugar transferases 96 491 IPR029044 -
Gso11g0997 530 Pfam Nucleotidyl transferase 100 376 IPR005835 GO:0009058|GO:0016779
Gso11g0997 530 ProSitePatterns ADP-glucose pyrophosphorylase signature 2. 194 202 IPR005836 GO:0005978|GO:0008878
Gso11g0997 530 ProSitePatterns ADP-glucose pyrophosphorylase signature 3. 309 319 IPR005836 GO:0005978|GO:0008878
Gso11g0997 530 PANTHER GLUCOSE-1-PHOSPHATE ADENYLYLTRANSFERASE-RELATED 1 530 IPR011831 GO:0005978|GO:0008878
Gso11g0997 530 TIGRFAM glgC: glucose-1-phosphate adenylyltransferase 98 494 IPR011831 GO:0005978|GO:0008878
Gso11g0997 530 Gene3D Hexapeptide repeat proteins 396 530 - -
Gso11g0997 530 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 84 395 IPR029044 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g0997 Gso-Chr11 8898201 8903687 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g0997 K00975 - gmx:100790220 1063.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g0352 12 3097252 3102684 Gso11g0997 11 8898201 8903687 GST