Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g0987 ATGTGTGACACTATGTCTATGTCGTCCGCACCTATTACAGATCATCGACCTGTTAAAGGTCTTGAGATGGAATATGTAGAGGATGATAAGAAAAAAAAGCTTGGCTCTTTAAAGAAGGTAGCAATCAGTGCATCTTCAAAGTTCAGGCATTCCTTGCAAATGAAGGGGAGAAGGCATAGCAGGGTTGTGTCTGTTGCTATTGAGGATAACGTTGATGCCCAAGAGTTGCAAGTAGTTGATGCTTTTCGCCAAGCACTTATCTTGGAAGAGCTATTACCTGCAAAATATGATGATCACCATACGATGTTAAGATTCTTGAGAGCAAGGAAATTTGACATTGAAAAAACAAAACAAATGTGGGCAGATATGCTTCAGTGGAGGAGGGAGTTTGGTGCTGACACCATCATGGAGGATTTTGAATTCAAGGAGAGAGATGAAGTTCAAAAATACTACCCGCAAGGGCATCACGGAGTTGATAAGGAAGGGCGACCTGTTTACATAGAAAAGTTGGGTCAGGTGGACTCTAACAAGCTGATGCAAGTAACAACTATGGATCGCTATCTTAAGTACCATGTTAGAGAGTTTGAGAAGACATTCGTTGTTAAGTTCCCTGCCTGTTCAATCTCAGCAAAGAAGCACATTGACCAAAGCACAACTATCTTGGATGTGCAAGGAGTGGGTCTCAAAAGTTTGAACAAAGCTGCAAGGGATCTCATCCAGCGTCTTCAGAAGATTGATGGTGACAACTATCCTGAGTCCTTGAACAGTATGTTCATCATCAATGCTGGTTCTGGATTTAGAATGTTGTGGAACAGTATTAAGTCGTTCCTTGATCCTAAGACCACCTCCAAAATCCATGTCCTAGGTAACAAATACCAGAGCAAGTTGCTTGAAATCATTGATGCCAGTGAACTTCCAGAGTTCTTGGGTGGTACTTGTACCTGTGCAGACAAAGGTGGCTGTATGCTTTCAGACAAGGGACCATGGAATGACATTGAAATCTTGAAGATGGTTCAAAATGGCGAAGGAAAATGCAAGAGGAAAACCTTATCTGGGATTGAAGAGAAAACAATCATTCAAGATGAAATAGCATGCCAAAAGGAACACGATCCTTTCAACAAAGAATCTGTGCAACTCGGCGCTGTTCCAGAAGTCGCCTTTGTCCCAGTGATTGACAAGCAAGTTAATGCATCTTGGGAAAAAGCGGTACAAAATAATCAACTTGCAGCTTCTAAAGATTGTTTCCCTAGCGATGCTTCCAACACTTTTAACGGTTTTAGGATTCCATTTACTGGTGGAATCATTACCATTCTTATGGGAGTGATAACCATGCTCCGCATGACACGGAATATGCCAAGGAAAGTCACTGAAGCCACCGCCTTGTATGCTAACCCTCTATATTGTGATGGCAACATGATGAAAGCACCTGCCATTTCCATGAATGATCAAATGGCCCTGATGAAGCGCATGGCTGAACTCGAAGAGAAGGTGAATGTCCTCTCTATGAAACCTACCATGCCACCTGAAATGGAAGAATTGCTGAATAATGCTCTTAACAGAGTCAACACCCTGGAACAAGAGTTGGATAGTACCAAAAAGTCACTTGATGATGCCCTTGCTCGACAAGTGGAGCTTCAAGCTCACCTTGACAAAAAGAAAAAGAAGAAGAAATTCTTCCGCTGGTAA 1686 0.4223 MCDTMSMSSAPITDHRPVKGLEMEYVEDDKKKKLGSLKKVAISASSKFRHSLQMKGRRHSRVVSVAIEDNVDAQELQVVDAFRQALILEELLPAKYDDHHTMLRFLRARKFDIEKTKQMWADMLQWRREFGADTIMEDFEFKERDEVQKYYPQGHHGVDKEGRPVYIEKLGQVDSNKLMQVTTMDRYLKYHVREFEKTFVVKFPACSISAKKHIDQSTTILDVQGVGLKSLNKAARDLIQRLQKIDGDNYPESLNSMFIINAGSGFRMLWNSIKSFLDPKTTSKIHVLGNKYQSKLLEIIDASELPEFLGGTCTCADKGGCMLSDKGPWNDIEILKMVQNGEGKCKRKTLSGIEEKTIIQDEIACQKEHDPFNKESVQLGAVPEVAFVPVIDKQVNASWEKAVQNNQLAASKDCFPSDASNTFNGFRIPFTGGIITILMGVITMLRMTRNMPRKVTEATALYANPLYCDGNMMKAPAISMNDQMALMKRMAELEEKVNVLSMKPTMPPEMEELLNNALNRVNTLEQELDSTKKSLDDALARQVELQAHLDKKKKKKKFFRW* 562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g0987 561 Pfam CRAL/TRIO, N-terminal domain 97 122 IPR011074 -
Gso11g0987 561 Gene3D - 61 130 - -
Gso11g0987 561 CDD SEC14 145 312 IPR001251 -
Gso11g0987 561 Coils Coil 514 555 - -
Gso11g0987 561 PRINTS Cellular retinaldehyde-binding protein signature 101 123 - -
Gso11g0987 561 PRINTS Cellular retinaldehyde-binding protein signature 270 289 - -
Gso11g0987 561 PRINTS Cellular retinaldehyde-binding protein signature 303 312 - -
Gso11g0987 561 PANTHER CRAL-TRIO DOMAIN-CONTAINING PROTEIN YKL091C-RELATED 10 559 - -
Gso11g0987 561 SUPERFAMILY CRAL/TRIO domain 145 339 IPR036865 -
Gso11g0987 561 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 143 317 IPR001251 -
Gso11g0987 561 Coils Coil 228 248 - -
Gso11g0987 561 Pfam CRAL/TRIO domain 149 311 IPR001251 -
Gso11g0987 561 Gene3D - 131 342 IPR036865 -
Gso11g0987 561 PANTHER SEC14P-LIKE PHOSPHATIDYLINOSITOL TRANSFER FAMILY PROTEIN 10 559 - -
Gso11g0987 561 SMART CRAL_TRIO_N_2 98 123 IPR011074 -
Gso11g0987 561 SUPERFAMILY CRAL/TRIO N-terminal domain 69 139 IPR036273 -
Gso11g0987 561 Coils Coil 483 503 - -
Gso11g0987 561 SMART sec14_4 143 314 IPR001251 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g0987 Gso-Chr11 8826676 8831516 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g0987 77 308 Acyl Lipid Metabolism Gene Families AT5G47730 27.801 4.59e-21 92.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g0987 - - gmx:100792335 1089.33