Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g0973 ATGAACAATCCAACTCTTATAATCTTCTTCCTTGTTATTTTCTCCGTCTTCTTCGCGGCGTCGGCGGACGGCGGCGACGATGAGCCGCTGATCATGCAGGTGGTGGAGGGCAGCGGCGTCCGGTTGGGAGCAGAGCACCACTTTTTGGACTTCAAGCGCAGGTTCGGGAAGGCGTACGCTTCCCAGGAGGAGCACAATTACAGGTTCGAGGTGTTCAAGGCTAACATGCGCCGCGCTCGCCGCCATCAGAGCCTGGACCCTTCGGCGGCACACGGCGTTACGCGGTTCTCTGATCTCACGGCGTCGGAGTTCCGGAATAAGGTTTTGGGTCTGAGAGGTGTGAGGTTGCCTTCCAACGCAAACAAGGCTCCAATTCTCCCCACCGATAATCTTCCCAGTGATTTTGATTGGAGAGATCACGGAGCAGTTACCCCTGTCAAGAATCAGGGTTCGTGCGGTTCGTGTTGGAGCTTCAGCACCACGGGGGCTCTTGAAGGTGCTCACTTTCTGTCCACAGGGGAACTCGTCAGTCTTAGCGAGCAGCAGCTTGTTGATTGTGATCACGAGTGTGATCCAGAAGAAGCAGGTTCTTGCGACTCCGGGTGCAATGGTGGATTGATGAACAGTGCTTTTGAGTACATCCTTAAATCTGGTGGGGTCATGCGCGAGGAAGACTATCCTTATTCTGGTACTGATCGCGGGAACTGCAAATTCGACAAAGCAAAGATTGCAGCATCAGTGGCAAACTTCAGTGTCATCTCACTAGATGAAGACCAGATTGCTGCCAATCTGGTGAAAAATGGCCCTCTTGCAGTGGCCATCAATGCAGCATATATGCAGACATATATCGGTGGAGTGTCATGCCCATACATATGTTCAAGAAGGCTTGATCATGGGGTGTTATTGGTGGGATATGGTTCTGGTGCCTATGCACCCATTCGGATGAAGGAGAAGCCATTTTGGATCATTAAAAATTCCTGGGGAGAGAACTGGGGAGAAAATGGATACTACAAGATTTGCCGGGGACGAAATATCTGTGGGGTGGACTCCATGGTTTCAACTGTGGCTGCTGTTCATACAACTACTCAGTAG 1092 0.5137 MNNPTLIIFFLVIFSVFFAASADGGDDEPLIMQVVEGSGVRLGAEHHFLDFKRRFGKAYASQEEHNYRFEVFKANMRRARRHQSLDPSAAHGVTRFSDLTASEFRNKVLGLRGVRLPSNANKAPILPTDNLPSDFDWRDHGAVTPVKNQGSCGSCWSFSTTGALEGAHFLSTGELVSLSEQQLVDCDHECDPEEAGSCDSGCNGGLMNSAFEYILKSGGVMREEDYPYSGTDRGNCKFDKAKIAASVANFSVISLDEDQIAANLVKNGPLAVAINAAYMQTYIGGVSCPYICSRRLDHGVLLVGYGSGAYAPIRMKEKPFWIIKNSWGENWGENGYYKICRGRNICGVDSMVSTVAAVHTTTQ* 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g0973 363 SMART pept_c1 131 356 IPR000668 GO:0006508|GO:0008234
Gso11g0973 363 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 320 339 IPR025661 -
Gso11g0973 363 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 149 160 IPR000169 -
Gso11g0973 363 Pfam Papain family cysteine protease 131 354 IPR000668 GO:0006508|GO:0008234
Gso11g0973 363 CDD Peptidase_C1A 132 355 IPR039417 -
Gso11g0973 363 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 36 357 - -
Gso11g0973 363 PRINTS Papain cysteine protease (C1) family signature 149 164 IPR000668 GO:0006508|GO:0008234
Gso11g0973 363 PRINTS Papain cysteine protease (C1) family signature 298 308 IPR000668 GO:0006508|GO:0008234
Gso11g0973 363 PRINTS Papain cysteine protease (C1) family signature 320 326 IPR000668 GO:0006508|GO:0008234
Gso11g0973 363 SMART Inhibitor_I29_2 48 104 IPR013201 -
Gso11g0973 363 PANTHER CYSTEINE PROTEASE RD19C-RELATED 36 357 - -
Gso11g0973 363 Gene3D Cysteine proteinases 30 356 - -
Gso11g0973 363 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 296 306 IPR025660 -
Gso11g0973 363 SUPERFAMILY Cysteine proteinases 46 355 IPR038765 -
Gso11g0973 363 Pfam Cathepsin propeptide inhibitor domain (I29) 48 104 IPR013201 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g0973 Gso-Chr11 8717397 8719574 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g0973 K01373 - gmx:100791283 737.258
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g0325 12 2909264 2912078 Gso11g0973 11 8717397 8719574 GST