LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gso11g0961	ATGGCTTTGAAACTCTCGTCACTATCTCTTCACTCCTCTCTCCGCCACCAGCACCCTAATTCGTCGCATTCAAACCATCGCATTCCCCTTCGTTTCTTTGCACCTTCCCTTCCTCCCACTTCGTGTCTCTCCGGCGCAGCCTCAGTCTCCACATTTCATCGCACTCTCTTCGCCGTAACCGTTCGCGCATTTCAAAGCCAAGACGAAAGCAAAAGCAGTGATGTTTTTGAAGAAGAAGAAAAAGACGAAGAAATATCGAGGCAGGGTGAGAAAAAGGAACTCGCGAAGCAAAGCATATGGAGTCAGATAAAGGAAATTGTGATGTTTACAGGACCAGCAACGGGTCTTTGGATTTGTGGACCGCTTATGAGTCTCATCGATACTGCAGTTATTGGTCAGAGAAGCTCAATTGAGCTTGCTGCTTTAGGTCCTGCTACAGTTGTTTGCGACTACATGAGCTACGTGTTCATGTTTCTATCAATTGCTACTTCCAATATGGTTGCTACTGCCCTTGCCAAGCAGGACAAAGAAGAAGTACAGCATCACATATCTGTCTTGCTTTTTATTGGGTTATCTTGTGGCGTTGGGATGCTTTTGTTCTCAAGGCTATTTGGTGCATCACTAATAACTGCTTTCACTGGGCCAAAGAATGCACACGTAGTACCTGCAGCTAGCAATTATGTGAAGATTCGAGGCTTGGCATGGCCTGCTTTACTTGTTGGATGGGTTGCTCAGAGTGCAAGTCTTGGTATGAAAGATTCCTTGGGACCCTTGAAAGCTTTGGCTGCTGCTACAGTTATAAATTTCGCTGGTTGTATACTTTTGTGCACCTATTTAGGCTATGGAATTGTAGGGGCTGCGTGGGCTACAATGGTTGCCCAAGTTGTTGCCGCTTACATGATGATTCAAAATCTAAACATGAAGGGATATAATGCACTTGCCTTCTCCATTCCTACAGGGAAGGAAATTCTGATGATACTTGGGCTTGCTGCTCCTGTTTTTTTGACACTGATGTCAAAGGTGGCTTTCTACGCACTACTTATATATTTTGCTACATCAATGGGTACACATACAATGGCTGCTCATCAAGTCATGGTCCAAACTTATGGTATGTGTACAGTATGGGGTGAACCTCTCTCCCAAACTGCTCAATCATTTATGCCTGAATTGATATATGGAGTAAATAGGAGTTTGTCAAAGGCCCGATTGCTTCTAAAGTCTCTTGTGACAATTGGAGCTATGCTTGGATTATTGTTAGGGATTGTTGGAACATCAGTACCTTGGTTATTTCCCTATGTTTTTACTCCTGATCGGATGGTGATTCAGGAGATGCATAAGGTGCTGATTCCATACTTTATAGCGCTGGCTATAACACCCCCTACTCACAGCCTCGAGGGAACGTTGCTGGCTGGACGGGATCTGAAATTTATAAGTTTATCAATGACTGGATGCTTTTGTGTGGGTACATTAGTATTATGGGCTTTGAGTAGTAGATTCGGTTTGCTAGGCTGCTGGTTTTCCCTCGCATTATTTCAATGGGCTCGGTTTTCAATTGCCCTCCGGCGCCTTCTTTCTCCCAAGGGCATTTTATACTCGGAAGATACAGATCAGTATAAGCTGCGAAAGCTAAGGACTGCCTAA	1641	0.4436	MALKLSSLSLHSSLRHQHPNSSHSNHRIPLRFFAPSLPPTSCLSGAASVSTFHRTLFAVTVRAFQSQDESKSSDVFEEEEKDEEISRQGEKKELAKQSIWSQIKEIVMFTGPATGLWICGPLMSLIDTAVIGQRSSIELAALGPATVVCDYMSYVFMFLSIATSNMVATALAKQDKEEVQHHISVLLFIGLSCGVGMLLFSRLFGASLITAFTGPKNAHVVPAASNYVKIRGLAWPALLVGWVAQSASLGMKDSLGPLKALAAATVINFAGCILLCTYLGYGIVGAAWATMVAQVVAAYMMIQNLNMKGYNALAFSIPTGKEILMILGLAAPVFLTLMSKVAFYALLIYFATSMGTHTMAAHQVMVQTYGMCTVWGEPLSQTAQSFMPELIYGVNRSLSKARLLLKSLVTIGAMLGLLLGIVGTSVPWLFPYVFTPDRMVIQEMHKVLIPYFIALAITPPTHSLEGTLLAGRDLKFISLSMTGCFCVGTLVLWALSSRFGLLGCWFSLALFQWARFSIALRRLLSPKGILYSEDTDQYKLRKLRTA*	547

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gso11g0961	546	PANTHER	PROTEIN DETOXIFICATION 44, CHLOROPLASTIC-RELATED	35	535	IPR044644	-
	Gso11g0961	546	CDD	MATE_DinF_like	104	525	IPR044644	-
	Gso11g0961	546	PANTHER	PROTEIN DETOXIFICATION 46, CHLOROPLASTIC	35	535	-	-
	Gso11g0961	546	MobiDBLite	consensus disorder prediction	70	89	-	-
	Gso11g0961	546	Pfam	MatE	120	272	IPR002528	GO:0015297\|GO:0016020\|GO:0042910\|GO:0055085
	Gso11g0961	546	TIGRFAM	matE: MATE efflux family protein	114	505	IPR002528	GO:0015297\|GO:0016020\|GO:0042910\|GO:0055085

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gso11g0961	Gso-Chr11	8596600	8602554	Tandem

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gso11g0961	K03327		-	gmx:100778835	1039.25