Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g0945 ATGGGAATTGTTGGCTTTGAAATTAATGCGAATTCTGCTTCTGCTTCTGCTTTGCATTATTATGGTGCTAATTCGTTCTCTTCCCACACGGTTCCTTTTTCTCTGAGACCCTTTTTCGGGAATGCTCTGAACGTGAACACGAGGGTTGCAGGGAAGATTCGGGCCTCTCATGCTAGAAAGCCCAAATTCGGAGCAGTTATTGTTGCTTCACTGAGTGGTGGCTCTAATAATGCTGGGTTGATTAGTGACGCTGTTCTTCCCAAAGACTCAGAATTTAAGCCATCCTTCGACGAATATTTGAAGGCCATGTCTGTCAGAACTGTAAGGGTCAAGAAGCGTGCTGCCACTACTCAAAAACACAAGAAGACGGAAAACGGTGATAATAATAAAATTGATAGAGAAGATGAAGTTGGTGTGTACAAAGAAGGTTGCTCCACCAGAAGTAATAATAATGGTAAGGTCAGAAGAACAGCAACTAAAGGATTCACAAGTGAAAATGATGGCAACCTTGATGATGTAAAGGCAAAGCAGAAGAAAAGTGGAGCAAATGTAAGACAAAATGGGCCGTTGAAACGCCGAAGTCGGAGTTTAGAGCCAGAATCATATGATGGCAGTGAGATTGGCAAAAGTGGAAGTGGAAGGATGAGCAAGAGCATAGTTAGGTCTAGTTTGAATGGTAGCCATGGGAGTGTCAGAGAGAGAGGAGTGACTCATGATTTGTATTCTTCAAAGATGTTGGGAGAAAAGATTGTTAGTAACAGACAAAGGGATTACAATACACAGGGTAAACCCCCCCCTGGTGGAAATAAAATTGTTGCTAGGCAACAACAAGTTCAGGATAGAGGGCTTGATAGAAAAAGACATACTGAAAATGGAAGTTTGGCTTATAGAAATGGAAGCCGTAAGCGTTTCATTGATAGGGGTTATGATTCTGACAATTTGGAGGTCGAACGAGCAGCATTTGAGAATCTTGAGGACCCAAACAATGTTATCAGAAAGTCACAGTTTTCACATAAGGAAATGGAGGAGAAAATCCAAAAGCTAGCCAATTCGTTAAATGGTGCAGATATCAATTTACCTGAATGGATGTTTTCTAAGATGATCAGAAGTGCAAGGCTTAAATTTAATGACTATGCCATAACAAGGATTATCATAATCTTGGGAAAACTAGGAAACTGGCGGCGAGTGATACAAGTGATTGAATGGCTTCAAAAGCGTGAACGTTTCAAGTCCCATAAACTAAGGCATATATATACCGCTGCTCTTGATGCACTTGGAAAGTCGAGGAGACCTGTAGAGGCACTAAATATATTTCATGCAATGCAGCAACAAATGTCCTCATATCCTGATTTAGTAGCTTATCATAGTATTGCTGTGACTCTTGGGCAAGCAGGGCACATGAAGGAACTTTTTGATGTGATTGATATTATGCGATCACCACCCAAGAAGAAGTTCAAAACAGGGATATTTGAGAACTGGGACCCAAGGCTGGAACCGGATATTGTAGTCTATCATGCTGTCCTTAATGCTTGTGTTAGGCGGAAACAATGGGAAGGAGCCTTTTGGGTTTTGCAGCAGTTAAAGAAGCAAGGACAGCCGCCTTCTGCCACAACTTACGGCCTAGTTATGGAGGTGATGCTTTCATGTGGCAAGTATAACTTGGTTCATGAATTTTTCAGAAAACTTCAGAAGTCTTTCAGTCCCAATTCATTGACATATAGAGTTCTTGTAAATACACTTTGGCAAGAGGGAAAACCTGATGAGGCTATACTGGCTGTCCAAGAAATGGAAAGACGTGGAATTGTAGGTTCTGCTTCTCTTTATTATGATCTAGCTCGATGCCTCAGTGCAGCAGGAAGAAGTCATGAGGCACTAAAGCAGATAGACAAGATATGTAAAGTTGCAAATAAACCACTGGTAGTGACCTACACTGGCTTGATGCAAGCAAGTCTAGACGCTGGAAACATTCAAGATGGGGCTTATATTTTTGAGAAAATGAAGGAAATTTGTGCTCCAAATCTGGTTACTTGTAACATAATTCTGAAAGCTTACTTGGAACATGGCATGTTTCAAGAAGCTAAAGTGTTGTTTGAGCAGATGTCAGAAAATGCAAATCGTCTGAGGGGAAATACTGATTACAAAATGCTGGTGGTACCAGATACATACTCATTCAACACCATGCTAGATGCATGTGTTGCAGAGAAGAGATGGGATTATTTTGATCATGTGTATCAAAGGATGCTGTACCATGGTTATCACTTCAATCCAAAACGTCATCTTCGAATGATATTGGAGGCTTCAAAAGCTGGAAAGGAACGGCCTTTGGAGATAACATGGAAGCACTTAACCGATACAGATCGTATTCCACCTGCTCCTCTGATCAAGGAGAGGTTCTGTGCAAAGCTTGAGAAAGATGACTATGTTGCTGCTCTCACATGTATCATCAACAATCCCCCTAAAGACTTGCAGCCATTTTCCAAATCGTCTTGGTTGAAACTATTCAAAGAAAATTCTCAGCGATTTCAGAAGGATACGATTGTTGGACTAATGAACGAGGCCAGCAATATAGTTTCCAATAATAGTTTTCCAAATCCAACACTTGAGTATTTAATTCAATCATGCAAAGAATTTCTTTTTGCTACTGTCCTCAGTACAGCTGACATGGATTCAGTAAAAATGTAG 2682 0.4079 MGIVGFEINANSASASALHYYGANSFSSHTVPFSLRPFFGNALNVNTRVAGKIRASHARKPKFGAVIVASLSGGSNNAGLISDAVLPKDSEFKPSFDEYLKAMSVRTVRVKKRAATTQKHKKTENGDNNKIDREDEVGVYKEGCSTRSNNNGKVRRTATKGFTSENDGNLDDVKAKQKKSGANVRQNGPLKRRSRSLEPESYDGSEIGKSGSGRMSKSIVRSSLNGSHGSVRERGVTHDLYSSKMLGEKIVSNRQRDYNTQGKPPPGGNKIVARQQQVQDRGLDRKRHTENGSLAYRNGSRKRFIDRGYDSDNLEVERAAFENLEDPNNVIRKSQFSHKEMEEKIQKLANSLNGADINLPEWMFSKMIRSARLKFNDYAITRIIIILGKLGNWRRVIQVIEWLQKRERFKSHKLRHIYTAALDALGKSRRPVEALNIFHAMQQQMSSYPDLVAYHSIAVTLGQAGHMKELFDVIDIMRSPPKKKFKTGIFENWDPRLEPDIVVYHAVLNACVRRKQWEGAFWVLQQLKKQGQPPSATTYGLVMEVMLSCGKYNLVHEFFRKLQKSFSPNSLTYRVLVNTLWQEGKPDEAILAVQEMERRGIVGSASLYYDLARCLSAAGRSHEALKQIDKICKVANKPLVVTYTGLMQASLDAGNIQDGAYIFEKMKEICAPNLVTCNIILKAYLEHGMFQEAKVLFEQMSENANRLRGNTDYKMLVVPDTYSFNTMLDACVAEKRWDYFDHVYQRMLYHGYHFNPKRHLRMILEASKAGKERPLEITWKHLTDTDRIPPAPLIKERFCAKLEKDDYVAALTCIINNPPKDLQPFSKSSWLKLFKENSQRFQKDTIVGLMNEASNIVSNNSFPNPTLEYLIQSCKEFLFATVLSTADMDSVKM* 894
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g0945 893 MobiDBLite consensus disorder prediction 111 237 - -
Gso11g0945 893 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 673 707 IPR002885 -
Gso11g0945 893 MobiDBLite consensus disorder prediction 143 166 - -
Gso11g0945 893 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 569 603 IPR002885 -
Gso11g0945 893 Gene3D Tetratricopeptide repeat domain 339 488 IPR011990 GO:0005515
Gso11g0945 893 Gene3D Tetratricopeptide repeat domain 489 585 IPR011990 GO:0005515
Gso11g0945 893 SUPERFAMILY TPR-like 485 702 IPR011990 GO:0005515
Gso11g0945 893 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 500 534 IPR002885 -
Gso11g0945 893 Pfam Pentatricopeptide repeat domain 638 684 IPR002885 -
Gso11g0945 893 Pfam Pentatricopeptide repeat domain 497 545 IPR002885 -
Gso11g0945 893 Coils Coil 338 358 - -
Gso11g0945 893 MobiDBLite consensus disorder prediction 211 230 - -
Gso11g0945 893 TIGRFAM PPR: pentatricopeptide repeat domain 675 703 IPR002885 -
Gso11g0945 893 TIGRFAM PPR: pentatricopeptide repeat domain 417 450 IPR002885 -
Gso11g0945 893 TIGRFAM PPR: pentatricopeptide repeat domain 722 748 IPR002885 -
Gso11g0945 893 MobiDBLite consensus disorder prediction 119 141 - -
Gso11g0945 893 Gene3D Tetratricopeptide repeat domain 604 783 IPR011990 GO:0005515
Gso11g0945 893 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 720 754 IPR002885 -
Gso11g0945 893 MobiDBLite consensus disorder prediction 253 292 - -
Gso11g0945 893 Pfam PPR repeat 722 751 IPR002885 -
Gso11g0945 893 Pfam PPR repeat 572 601 IPR002885 -
Gso11g0945 893 Pfam PPR repeat 417 443 IPR002885 -
Gso11g0945 893 PANTHER OS01G0674700 PROTEIN 13 883 IPR044645 GO:0009658
Gso11g0945 893 PANTHER OS01G0674700 PROTEIN 13 883 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g0945 Gso-Chr11 8469030 8477514 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g0945 502 770 Miscellaneous Gene Families AT4G11690 20.678 8.38e-12 67.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g0945 - - gmx:100787028 1793.86