Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g0919 ATGGCATCCAAGAGAATACTGAAGGAGCTCAAGGACTTACAGAGAGATCCACCAACTTCATGCAGTGCAGGCCCTGTGGGCGAGGACATGTTCCATTGGCAAGCAACCATCATTGGTCCAAATGACAGTCCCTATGCTGGTGGTGTTTTCCTTGTGACCATCCATTTCCCTCCCGATTATCCCTTCAAACCTCCCAAGGTAGCATTCAGGACCAAGGTGTTCCATCCCAACATTAACAGCAATGGCAATATTTGCCTGGACATACTCAAAGAACAATGGAGTCCTGCTCTCACCATATCCAAGGTGCTGCTCTCTATATGTTCTCTGCTAACGGATCCAAATCCTGATGACCCTTTAGTGCCTGAAATTGCTCATTTGTGCAAGACCGACAAATTCAAGTATGAGTCTACTGCTAGAAGCTGGACCCAGAAGTATGCCATGGGCTAA 447 0.472 MASKRILKELKDLQRDPPTSCSAGPVGEDMFHWQATIIGPNDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGNICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHLCKTDKFKYESTARSWTQKYAMG* 149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g0919 148 SMART ubc_7 4 147 - -
Gso11g0919 148 SUPERFAMILY UBC-like 2 147 IPR016135 -
Gso11g0919 148 Gene3D Ubiquitin Conjugating Enzyme 1 148 IPR016135 -
Gso11g0919 148 Pfam Ubiquitin-conjugating enzyme 5 141 IPR000608 -
Gso11g0919 148 PANTHER BNAA01G32320D PROTEIN 3 145 - -
Gso11g0919 148 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 1 147 IPR000608 -
Gso11g0919 148 CDD UBCc 3 142 IPR000608 -
Gso11g0919 148 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 74 89 IPR023313 -
Gso11g0919 148 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 3 145 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g0919 Gso-Chr11 8267595 8269169 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g0919 2 114 Miscellaneous Gene Families AT3G17000 36.975 2.28e-20 83.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g0919 - K06689 gmx:100805577 315.079
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g0278 12 2500601 2502139 Gso11g0919 11 8267595 8269169 GST