Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g0899 ATGCCAATGCCATCTCCCTCATTCCACAACCTCTGCATCGTCAAGTCCCTCCTCTCCAACCCTTCCCTCCCCGACGCCGTTTCTTCTCTTGACCTCTTGCGCCTCAAGGGCATTCGCTTACCCTCTCACGTTCTCGCCACCCTCCTGCGCCACTGCTCCAAAACCAGGTCTTACCGAGAGGGCAAGTTGATTCACCTCCACTTGAAGCTCACCGGTTTCAAACGCCCCCCAACGCTTCTTGCCAACCACTTGATCTCCATGTACTTCAGCTGCGGCGATTTCGTTCAGGCACGCAAGGTGTTCGACAAAATGGACGACAGAAACTTGTACACCTGGAACAATATGCTTTCTGGGTATGCTAAATTGGGCTTGCTGAAGCAAGCTAGGAGCTTCTTCTACCAAATGCCTCACAAGGATCATGTATCTTGGAATTCAATGGTGGCTGGGTATGCACACAAGGGCAGATTTGCTGAGGCTTTGAGATTTTATGGACACTTGAGGAGATTGTCTGTGGGGTATAATGAGTTTAGCTTTGCCAGTGTCTTGATTGTTTCTGTAAAGTTGAAGGATTTTGAACTTTGTAGGCAGATCCATGGGCAGGTTTTAGTTATTGGATTTTCGTCCAATGTAGTTATATCCAGCTTAATTGTTGATGCTTATGCCAAGTGTGGGAAGTTGGAAGACGCGAGGAGATTATTTGATGGCATGCCTGTGAGGGATGTTCGTGCGTGGACGACATTGGTTTCGGGTTATGCCACATGGGGGGACATGAAATCGGGTGCTGAGTTGTTTAGTCAGATGCCTAAAAGCAATTCCTGTTCGTGGACATCTTTGATTAGAGGCTATGCAAGAAATGGTATGGGTTATGAAGCAATTGGGGTGTTTAGACAAATGATCAGGCATCAAGTTAGACCTGATCAATTTACACTCAGTACTTGCCTCTTTGCTTGCGCCACTATTGCTTCACTGAAGCATGGTAGACAAATACATGCTTTTTTGGTGCTGAATAACATCAAACCTAATAATGTTGTCGTTTGTGCTATTGTTAACATGTATTCAAAATGTGGAAGCTTGGAAACTGCCATGCAAGTCTTTAATTTCATTGGAAATAAGCAGGATGTAGTGTTGTGGAACACGATGATATTGGCACTGGCTCACTATGGGTATGGTATAGAAGCAATTATGATGCTATATAATATGCTAAAATTAGGAGTGAAGCCAAATAGGGCCACTTTTGTTGGCATTCTAAATGCTTGTTGTCATTCAGGTCTTGTTCAGGAAGGGCTTCAGTTATTTAAGTCCATGACTGGTGGGCATGGTGTCGTCCCTGACCAAGAACACTATACTCGCTTAGCTAATCTTTTGGGTCAAGCTAGATCTTTTAATAAATCAGTGAAGGATCTGCAGATGATGGATTGTAATCCAGGTGACCATGGTTGTAATTCTTCGATGGGTCTATGTAGAATGCATGGGAATATAGATCATGAGACAGAAGTAGCTGCATTCCTTATTAAATTGCAGCCAGAATCTTCTGCTGCCTACGAATTTCTTGCAAGTACATATGCTTCACTTGGGAAATGGGAATTGGTTGAGAAAATAAGACATATTTTGGATGAGAGACAGGGGAGGAAAGGGTCAGGCTATTAG 1647 0.4402 MPMPSPSFHNLCIVKSLLSNPSLPDAVSSLDLLRLKGIRLPSHVLATLLRHCSKTRSYREGKLIHLHLKLTGFKRPPTLLANHLISMYFSCGDFVQARKVFDKMDDRNLYTWNNMLSGYAKLGLLKQARSFFYQMPHKDHVSWNSMVAGYAHKGRFAEALRFYGHLRRLSVGYNEFSFASVLIVSVKLKDFELCRQIHGQVLVIGFSSNVVISSLIVDAYAKCGKLEDARRLFDGMPVRDVRAWTTLVSGYATWGDMKSGAELFSQMPKSNSCSWTSLIRGYARNGMGYEAIGVFRQMIRHQVRPDQFTLSTCLFACATIASLKHGRQIHAFLVLNNIKPNNVVVCAIVNMYSKCGSLETAMQVFNFIGNKQDVVLWNTMILALAHYGYGIEAIMMLYNMLKLGVKPNRATFVGILNACCHSGLVQEGLQLFKSMTGGHGVVPDQEHYTRLANLLGQARSFNKSVKDLQMMDCNPGDHGCNSSMGLCRMHGNIDHETEVAAFLIKLQPESSAAYEFLASTYASLGKWELVEKIRHILDERQGRKGSGY* 549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g0899 548 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 108 142 IPR002885 -
Gso11g0899 548 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 209 243 IPR002885 -
Gso11g0899 548 Gene3D Tetratricopeptide repeat domain 177 320 IPR011990 GO:0005515
Gso11g0899 548 Gene3D Tetratricopeptide repeat domain 321 546 IPR011990 GO:0005515
Gso11g0899 548 Pfam PPR repeat 82 108 IPR002885 -
Gso11g0899 548 Pfam PPR repeat 346 366 IPR002885 -
Gso11g0899 548 Pfam PPR repeat 141 169 IPR002885 -
Gso11g0899 548 Pfam PPR repeat 214 239 IPR002885 -
Gso11g0899 548 Pfam PPR repeat 110 138 IPR002885 -
Gso11g0899 548 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 32 269 - -
Gso11g0899 548 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 125 547 - -
Gso11g0899 548 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 408 443 IPR002885 -
Gso11g0899 548 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 271 305 IPR002885 -
Gso11g0899 548 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 373 407 IPR002885 -
Gso11g0899 548 Pfam PPR repeat family 271 318 IPR002885 -
Gso11g0899 548 Pfam PPR repeat family 373 421 IPR002885 -
Gso11g0899 548 SUPERFAMILY TPR-like 138 527 IPR011990 GO:0005515
Gso11g0899 548 TIGRFAM PPR: pentatricopeptide repeat domain 216 241 IPR002885 -
Gso11g0899 548 TIGRFAM PPR: pentatricopeptide repeat domain 141 170 IPR002885 -
Gso11g0899 548 TIGRFAM PPR: pentatricopeptide repeat domain 82 109 IPR002885 -
Gso11g0899 548 TIGRFAM PPR: pentatricopeptide repeat domain 243 273 IPR002885 -
Gso11g0899 548 TIGRFAM PPR: pentatricopeptide repeat domain 110 140 IPR002885 -
Gso11g0899 548 TIGRFAM PPR: pentatricopeptide repeat domain 274 306 IPR002885 -
Gso11g0899 548 TIGRFAM PPR: pentatricopeptide repeat domain 375 408 IPR002885 -
Gso11g0899 548 TIGRFAM PPR: pentatricopeptide repeat domain 411 444 IPR002885 -
Gso11g0899 548 Gene3D Tetratricopeptide repeat domain 13 170 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g0899 Gso-Chr11 8060153 8065537 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g0899 30 547 Glycoside Hydrolase AT3G49170 26.960 5.80e-59 208
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g0899 - - gmx:100798659 1117.06