Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g0896 ATGGGCTTTAATCTCATTCCCCTCGACGACTCAAGTTTTGAAGTTGAGGCATTATCCTATGATTACTCTGCCAGCATTGAATGTTTGGCACACCCACTGAAGCCTCTATACAATGGAGGAATCATCCAAAACCCAGAACTGAATAATGAACTTCAAGGGTGGACTGCATTTGGGGACGCAAAAATAGAACATAGAGAATCATTAGGCAACAAATATGCTGTAGCCCATAGCAGAAATCAAGCACGTGATAGTGTCTCCCAGAAGATTTACCTTCAAAAGGATAAGCATTATACTTTATCCGCTTGGATACAAGTGAAAGGGAGTGAGGGAAACGTTCCTGTAACAGCAGTTGTGAAAACAACTACAAGATTAAAATTTGCTGGTGCCATTTTTGCTGAGTCTAATTGCTGGTCTATGCTTAAGGGTGGTCTCACATCAGATGAATCAGGACCAGCTGAGCTCTATTTTGAGGGCAATGATACTTCTGCCGAAATTTGGATAGACAATGTTTCCTTACAACCATTCACAGAGGAGGAATGGAGGTCCCATCAAGATGAAAGCATTGAGAGGGCTCGTAAGAGGAAGGTATTAGTCCAAGCAGTTGATGAAGAAGGAAATCCTTTACCAAACGCAACCATATCTTTTGTACAGAAGAGGCCAGGGTTTCCATTTGGAAGTTCCATGAGCAGTAGCATCCTAAACAATAAGTTATATCAGGATTGGTTCACCTCTAGATTCACTGTCACCACATTTGGAAATGAAATGAAGTGGTACAGCACCGAAAACGTGCAAGGCAAGGAAGACTACTCGGTCGCGGATGCCATGTTGCAGTTTGCAAAGCAACACAACATTGCTGTTCGCGGCCACAACATATTTTGGGATGATCCTCATTTCCAACCTAGTTGGGTTCCTTCACTCTCCCCACCCCAGCTTAACTCTGCAGTGGAAAAGAGGGTGAGATCTGTTGTGTCAAGATATAGGGGCCAACTTATTGCTTGGGATGTTGTGAATGAAAATCTGCACTTCTCATTCTTTGAAGATAAACTTGGACAAGCCTTTTCAGGTAGGATCTTCAATGAGGCTCATAATATTGATGGACAAACAACTTTGTTCCTGAATGAATATAACACCATTGAGGATAGTAGAGATGGTGTTTCAAGCCCCGCAAAATATATTCAGAAGCTTAAGCAAATTCAAAGTTATCCTGGGAATGCAGGATTGCCAATTGGAATTGGGCTTGAGGCTCATTTCCCCGCTCAGGGTATTAACTTTCCTTATTTGAGAGCTTCCATTGATAATCTTGCTGCTACTCGTTTGCCAATTTGGATTACAGAACTAGATGTTGCAAGCCAGCCTAATGTGCAGTCACAGTACTTCGAGCTTGCTCTTAGAGAGTTACATGGCCACCCAATGGTTAGGGGTCTTGTGATGTGGACAGGCCCGTCGCCAGAAGGTTGCTATAGGATTTGCTTGGTAGATAACAATTTCAGGAACTTGCCTGCAGGGAAAGTTGTGGACAAACTCCTTTCTGAATGGAGGTTAAGCAAATTATCAGGAATGACAGATCAAAATGGATTCTTTGAGGCCAATCTTTTTCATGGAGACTATGAAATTGAAGTCAGTCACCCTGTTATGAAGAATTACACCTTCACACAACGCCTACAAGTGACTCCAACAGATGACTCCAAGGAAACAAAACAATTTGTACAACTTTCTATGTAG 1722 0.4233 MGFNLIPLDDSSFEVEALSYDYSASIECLAHPLKPLYNGGIIQNPELNNELQGWTAFGDAKIEHRESLGNKYAVAHSRNQARDSVSQKIYLQKDKHYTLSAWIQVKGSEGNVPVTAVVKTTTRLKFAGAIFAESNCWSMLKGGLTSDESGPAELYFEGNDTSAEIWIDNVSLQPFTEEEWRSHQDESIERARKRKVLVQAVDEEGNPLPNATISFVQKRPGFPFGSSMSSSILNNKLYQDWFTSRFTVTTFGNEMKWYSTENVQGKEDYSVADAMLQFAKQHNIAVRGHNIFWDDPHFQPSWVPSLSPPQLNSAVEKRVRSVVSRYRGQLIAWDVVNENLHFSFFEDKLGQAFSGRIFNEAHNIDGQTTLFLNEYNTIEDSRDGVSSPAKYIQKLKQIQSYPGNAGLPIGIGLEAHFPAQGINFPYLRASIDNLAATRLPIWITELDVASQPNVQSQYFELALRELHGHPMVRGLVMWTGPSPEGCYRICLVDNNFRNLPAGKVVDKLLSEWRLSKLSGMTDQNGFFEANLFHGDYEIEVSHPVMKNYTFTQRLQVTPTDDSKETKQFVQLSM* 574
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g0896 573 ProSiteProfiles Glycosyl hydrolases family 10 (GH10) domain profile. 210 508 IPR001000 GO:0004553|GO:0005975
Gso11g0896 573 SUPERFAMILY (Trans)glycosidases 206 514 IPR017853 -
Gso11g0896 573 Gene3D - 37 173 - -
Gso11g0896 573 Gene3D Glycosidases 210 517 - -
Gso11g0896 573 Pfam Carbohydrate binding domain 41 158 IPR003305 GO:0016798
Gso11g0896 573 SMART glyco_10 255 509 IPR001000 GO:0004553|GO:0005975
Gso11g0896 573 Pfam Glycosyl hydrolase family 10 222 457 IPR001000 GO:0004553|GO:0005975
Gso11g0896 573 PANTHER GLYCOSYL HYDROLASE 10 551 IPR044846 GO:0004553|GO:0005975
Gso11g0896 573 PANTHER ENDO-1,4-BETA-XYLANASE A-LIKE 10 551 - -
Gso11g0896 573 SUPERFAMILY Galactose-binding domain-like 38 173 IPR008979 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g0896 Gso-Chr11 8026618 8039894 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g0896 11 566 Glycoside Hydrolase AT4G33840 57.168 0.0 674
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g0896 - - gmx:100775814 1128.62