Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g0868 ATGAAAATTGGATTCGGTGTAAGAGCTCTCCTCATTTCCTCTCGAAACAGTAACCCTCTCTCGTCGCCGCCACTGCTCTCACTCTTCTCTCCCTTTAGCGCCGTCAGATCCCTTCATTCTCCGCCGCCTTTCTCCGCAGCCGAAGCCATGCCCGAAACTGAGACTCACGATGTGGAGTGGCCGGCGAAGCGCGTTAGGGACACTTTCATCAGCTTCTTCCAGGACAAAAATCACGTCAACTGGAAGTCTAGCCCTGTCGTCCCCTTCAATGACCCCACTCTCCTCTTCGCCAACGCTGGTATGAACCAGTTCAAGCCCATCTTTTTGGGAACTGCGGATCCTAACACTGCCTTGAGCAAGCTCTCTCGTGCTTGCAACACACAGAAGTGCATTCGAGCTGGCGGTAAACACAATGATCTTGATGATGTAGGGAAGGATACTTACCATCACACCTTCTTTGAGATGTTGGGCAATTGGTCCTTTGGGGATTACTTTAAAGTAGAAGCCATCAGCTGGGCGTGGGAGCTTCTAACCAAAGTTTATAAATTACCATCAGATCGCATTTATGCCACATATTTTGGTGGTGATGATAAGTCTGGTCTTGCCCCTGACCTTGAGGCTAGGGATATATGGCTTAAGTTTTTACCTCCGGGGCGTGTGCTTCCTTTTGACTGTAAAGACAATTTCTGGGAGATGGGTGATACTGGTCCTTGCGGACCTTGCACTGAAATACATTTTGACAGAATTGGTAACCGTGATGCTGCATCATTGGTTAATAACGATGATCCTACCTGCATTGAGATATGGAACCTTGTCTTTATTCAGTTCAATAGGGAGGCTGATGGCTCTCTTAAACCTCTTCCAGCAAAGCATGTTGATACGGGAATGGGTTTTGAACGTTTGACCTCTATACTTCAGGACAAAATGAGCAATTATGATACGGATGTCTTCTTGCCAATCTTTGATGTTATTCAGCGGGCAACTGGTGCCAGACCATATTCTGGGAAAGTTGGACCAGATGATGCAGACAAAGTTGACATGGCATACAGGGTTGTTGCAGATCACATCAGAACTCTTTCATTTGCCATTGCTGATGGGTCTCGTCCTGGTAATGATGGTCGTGAGTATGTTCTGAGACGTATACTCCGTCGAGCTGTTCGGTATGGACGTGAAGTGCTAAAAGCTAAAGAGGGTTTTTTTAATGGGCTTGTAAGTGTTGTGGTGAATGTGATGGGTGATGTTTTCCCGGAGCTAAAACAACAGGAAACACACATTCGGAATATAATTGAAGAGGAGGAGGAAAGTTTTGGGAGAACCTTAATTAAGGGAATTGAGAAATTTGAGGCAGCTGTTCGACAAGTTCAGGGAAACATACTGAGTGGGGAGGAAGCATTTGTCTTGTGGGATACATATGGGTTTCCATTAGATCTCACTCAGCTTATGGCTGAAGAAAAGGGATTAGTTGTTGATGTCAAAGGTTTTGATAGTGCTATGGAAGCTGCAAGAGAGAGATCCAGAAGTGCTCAAACAAAGCAAGCTGGTGGTGCCATTGTCATGGATGCCGATGCTACCTCAGCTTTGCACAAAAGGGGCATTGTCCCAACAAATGATAGCTTCAAATATGCTTGGTTCAAGGACCATGAGAGTGTGGTAAAAGCAATATATACTGGTTCTGAGTTTGTTGATACTGTTAATACCGGTGATGATATTGGTGTAGTTCTGGAGTCTACAAGCTTCTATGCTGAGCAAGGTGGTCAGATTTTTGATACTGGATCACTTGAGGGCCCACATGCTTTATTTGAAGTGCGTAATGTTCAAGTTTATGGAGGCTTTGTTCTTCACATTGGTAATGGGACTGGTGTCTCAGTTGGCGACAAAGTAGTGTGCAAGGTTGATTATGGAAGACGCGCCCTTATAGCCCCTAACCATACCTGCACACACATGTTAAATTTTGCCCTTAGGGAAGTACTTGGTGATCATGTTGACCAGAAAGGATCCATTGTTCTTGCTGAAAAATTGAGATTTGACTTTTCTCATGGCAAGCCTATTGAAGCTGACAATTTAAGGAGAATTGAATCAATTGTTAATGAGCAAATTAAAGCTGAGTTGGATGTAAGTGCAAAAGAGGCAACTCTTGCTGAAGCCAAGGGTATCAATGGTTTGCGAGCTGTTTTTGGGGAAGTCTATCCTGATCCTGTTAGAGTTGTGTCAATTGGACAAAAAGTTGAGGATCTCCTTGCTGACCCCAAGAATGAAAAATGGTTATCTATTTCATCAGAGTTATGTGGAGGTACCCATATTTCAAACACACGAGAGGCAAAAGCTTTTGCACTTTTATCTGAGGAGGGAATTGCAAAAGGAATACGCAGAATAACAGCTGTTACAACTGATCGTGCGTATGACGCAATGAAAGTGGCAGATGAATTTGAGCAGCAAGTAGATGATGCGGCTAAGTTAGTAGGAACTTTGCTAGAAGAGAAAGTTTCATCATTGAAAAGCAATATTGAAACTTTATCTATTCCTGCTGCCAAGAAAGCTGACATCAAGATCAAGATAGTTCGACTTCAGGATCAAGTAAGAAAAGCACAAAAGCAGGTCGCTGAGGAAAACAAGCGTAAAGCTGTAATGATTACAGCAGAGAAGGCTGAACTTGCTGCTTCAAATGGGAAAACATTTTGTATATCTCTTGTTGATGTTGGTCTGGATGTAGCTGCAGTTCGTGAGGCTGTTACAAAAGTCATGGACCAGAAGGGCTTATCTGTGATGGTTTTTAGCACGGACGAATCTACGAACAAGGCTGTAGTTTGTGCCGGGGTGCCAGAGAAAGGAGGTAAAGGTAATCTGGATGTGGCAGATTGGCTGAGTAATGCTTTGGGGCCTCTAAAAGGGAGATGTGGTAAAGGAAAAGGTGGTCTTGCCACGGGTCAGGGTACAGAGGCATCACATGTAAACGAGGCTATAGATCTTGCAGAAAAATTTGCGTCGATGAAATTGAGTTAA 3000 0.4403 MKIGFGVRALLISSRNSNPLSSPPLLSLFSPFSAVRSLHSPPPFSAAEAMPETETHDVEWPAKRVRDTFISFFQDKNHVNWKSSPVVPFNDPTLLFANAGMNQFKPIFLGTADPNTALSKLSRACNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKVEAISWAWELLTKVYKLPSDRIYATYFGGDDKSGLAPDLEARDIWLKFLPPGRVLPFDCKDNFWEMGDTGPCGPCTEIHFDRIGNRDAASLVNNDDPTCIEIWNLVFIQFNREADGSLKPLPAKHVDTGMGFERLTSILQDKMSNYDTDVFLPIFDVIQRATGARPYSGKVGPDDADKVDMAYRVVADHIRTLSFAIADGSRPGNDGREYVLRRILRRAVRYGREVLKAKEGFFNGLVSVVVNVMGDVFPELKQQETHIRNIIEEEEESFGRTLIKGIEKFEAAVRQVQGNILSGEEAFVLWDTYGFPLDLTQLMAEEKGLVVDVKGFDSAMEAARERSRSAQTKQAGGAIVMDADATSALHKRGIVPTNDSFKYAWFKDHESVVKAIYTGSEFVDTVNTGDDIGVVLESTSFYAEQGGQIFDTGSLEGPHALFEVRNVQVYGGFVLHIGNGTGVSVGDKVVCKVDYGRRALIAPNHTCTHMLNFALREVLGDHVDQKGSIVLAEKLRFDFSHGKPIEADNLRRIESIVNEQIKAELDVSAKEATLAEAKGINGLRAVFGEVYPDPVRVVSIGQKVEDLLADPKNEKWLSISSELCGGTHISNTREAKAFALLSEEGIAKGIRRITAVTTDRAYDAMKVADEFEQQVDDAAKLVGTLLEEKVSSLKSNIETLSIPAAKKADIKIKIVRLQDQVRKAQKQVAEENKRKAVMITAEKAELAASNGKTFCISLVDVGLDVAAVREAVTKVMDQKGLSVMVFSTDESTNKAVVCAGVPEKGGKGNLDVADWLSNALGPLKGRCGKGKGGLATGQGTEASHVNEAIDLAEKFASMKLS* 1000
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g0868 999 CDD AlaRS_core 62 308 - -
Gso11g0868 999 Coils Coil 845 872 - -
Gso11g0868 999 PRINTS Alanyl-tRNA synthetase signature 138 149 IPR002318 GO:0000166|GO:0005737
Gso11g0868 999 PRINTS Alanyl-tRNA synthetase signature 266 277 IPR002318 GO:0000166|GO:0005737
Gso11g0868 999 PRINTS Alanyl-tRNA synthetase signature 293 306 IPR002318 GO:0000166|GO:0005737
Gso11g0868 999 PRINTS Alanyl-tRNA synthetase signature 350 366 IPR002318 GO:0000166|GO:0005737
Gso11g0868 999 PRINTS Alanyl-tRNA synthetase signature 374 387 IPR002318 GO:0000166|GO:0005737
Gso11g0868 999 PANTHER ALANYL-TRNA SYNTHETASE 44 998 - -
Gso11g0868 999 Hamap Alanine--tRNA ligase [alaS]. 60 998 IPR023033 GO:0004813
Gso11g0868 999 Gene3D - 632 808 - -
Gso11g0868 999 SMART tRNA_SAD_4 733 792 IPR012947 GO:0004812|GO:0005524|GO:0043039
Gso11g0868 999 TIGRFAM alaS: alanine--tRNA ligase 65 975 IPR002318 GO:0000166|GO:0005737
Gso11g0868 999 Gene3D - 542 631 - -
Gso11g0868 999 Pfam tRNA synthetases class II (A) 65 633 IPR018164 GO:0000166|GO:0004813|GO:0005524|GO:0006419
Gso11g0868 999 SUPERFAMILY Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) 313 513 IPR018162 GO:0000166|GO:0004813|GO:0005524|GO:0005737|GO:0006419
Gso11g0868 999 SUPERFAMILY Translation proteins 558 631 IPR009000 -
Gso11g0868 999 Pfam DHHA1 domain 854 993 IPR003156 GO:0003676
Gso11g0868 999 ProSiteProfiles Alanyl-transfer RNA synthetases family profile. 60 805 IPR018165 GO:0003676|GO:0004813|GO:0005524|GO:0006419
Gso11g0868 999 Pfam Threonyl and Alanyl tRNA synthetase second additional domain 733 791 IPR012947 GO:0004812|GO:0005524|GO:0043039
Gso11g0868 999 Gene3D Bira Bifunctional Protein; Domain 2 61 309 IPR045864 -
Gso11g0868 999 PANTHER BNACNNG61840D PROTEIN 44 998 - -
Gso11g0868 999 SUPERFAMILY Class II aaRS and biotin synthetases 62 312 IPR045864 -
Gso11g0868 999 Gene3D - 885 994 - -
Gso11g0868 999 Coils Coil 806 826 - -
Gso11g0868 999 SUPERFAMILY ThrRS/AlaRS common domain 631 808 IPR018163 GO:0000166
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g0868 Gso-Chr11 7780005 7795741 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g0868 K01872 - gmx:100788271 1917.12