Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g0857 ATGGCCACTCTGCAATTCACCTTCACCGACTCAACCACATTGTTCAGGCCTTCTCTACCTTCCACGCGAACCTTCTCTCGAAACCGAAGCCTCATTGTCAAAGCCTCTTCTTCTTCTTCTGACGACTTCTCCAAAAGCAGGCGACGCTTCATCGCCGAAACCGCCGCACTCTCGGTCTCGCTCCCTCAGTTAGCGGCGCGTGCCGAAGACGCGCTTTCGGAGTGGGAGAGAGTATACCTCCCTATCGACCCCGGCGTCGTGCTTCTCGACATCGCTTTTGTCCCCGACGATCCCAACCACGGTTTTCTTCTCGGGACGAGGCAAACCATTCTGGAGACGAAAGATGGAGGAAACACTTGGGCTCCGCGTTCGATTCCTTCTGCTGAAGACGAAGATTTCAACTATCGCTTCAATTCCATCAGCTTCAAAGGGAAGGAAGGGTGGATTGTCGGAAAACCTGCGATTCTGTTGTACACTTCCGATGCCGGAGACAGTTGGGAGAGGATACCTCTCAGTGCTGAACTTCCAGGGGATATGGTGTACATAAAGGCAACCGGTGAGAAGAGTGCGGAGATGGTGACCGACGAAGGTGCCATATATGTTACTGCAAACAGAGGTTACAACTGGAGGGCTGCTGTGCAGGAAACTGTCTCAGCTACTCTTAACAGAACAGTTTCTAGTGGTATTAGTGGTGCAAGCTACTACACTGGAACTTTCAATACTGTCAATCGCTCTCCAGATGGAAGGTATGTTGCAGTCTCAAGTCGGGGCAACTTCTACTTAACCTGGGAGCCTGGTCAGCCATTCTGGCAGCCACATAATAGAGCAGTTGCCAGAAGAATCCAGAACATGGGATGGAGAGCTGATGGTGGTCTGTGGCTTCTTGTTCGTGGAGGTGGTCTTTATCTCAGCAAGGGCACAGGGTTAACTGAAGAATTTGAGGAGGTTCCTGTTCAAAGCCGGGGTTTTGGCATTCTTGATGTTGGATATCGTTCAACGGATGAGGCATGGGCAGCAGGAGGAAGTGGTATTCTTTTGAGAACTACTAATGGTGGCAAGTCATGGATCCGTGACAAAGCTGCTGACAACATTGCTGCAAATTTATACTCAGTGAAGTTCATTGATGAGAAGAAGGGATTTGTATTGGGGAATGATGGAGTCTTGCTTCGCTACCTTGGATAG 1182 0.5008 MATLQFTFTDSTTLFRPSLPSTRTFSRNRSLIVKASSSSSDDFSKSRRRFIAETAALSVSLPQLAARAEDALSEWERVYLPIDPGVVLLDIAFVPDDPNHGFLLGTRQTILETKDGGNTWAPRSIPSAEDEDFNYRFNSISFKGKEGWIVGKPAILLYTSDAGDSWERIPLSAELPGDMVYIKATGEKSAEMVTDEGAIYVTANRGYNWRAAVQETVSATLNRTVSSGISGASYYTGTFNTVNRSPDGRYVAVSSRGNFYLTWEPGQPFWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLYLSKGTGLTEEFEEVPVQSRGFGILDVGYRSTDEAWAAGGSGILLRTTNGGKSWIRDKAADNIAANLYSVKFIDEKKGFVLGNDGVLLRYLG* 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g0857 393 Pfam Photosynthesis system II assembly factor YCF48 71 391 IPR028203 -
Gso11g0857 393 Gene3D - 129 359 IPR015943 GO:0005515
Gso11g0857 393 PANTHER PHOTOSYSTEM II STABILITY/ASSEMBLY FACTOR HCF136, CHLOROPLASTIC 39 393 - -
Gso11g0857 393 PIRSF Photosystem_II_Ycf48-like 38 393 IPR016705 -
Gso11g0857 393 SUPERFAMILY Oligoxyloglucan reducing end-specific cellobiohydrolase 74 392 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g0857 Gso-Chr11 7657281 7661118 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g0857 - - gmx:100810566 780.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g0228 12 1936206 1940036 Gso11g0857 11 7657281 7661118 GST