Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g0726 ATGACCCAACCCCAAGATCCCTTCTCTTACCCTCCCATTGACCCAGTCAACTTCGATCTCATCATCGTCGGCACCGCCCTATCGGAATCCGTCATCGCCGCTGCCGCCTCCGCCGTCGGCAAAACCATCCTCCACCTCGACCCCAACTCCTTCTACGGCAGCCACTTCGCTTCTCTCTCCCTCCACGACCTCACTTCCTACCTCTCTTCCCCGCACTCCCTCCCCTCCGCCGCCGCCACAACCACTGACTCCGACGACGTCGTTGTCATCGACTTCGTCCAACAACCCCTCTGCTCCGACGCAGAAATCGCGACCTACGATGAATCCGCGTTTCTCAGCGAAAATTCGCGAAAATTCAGCATCGATTTGGGAGGTCCAAAGGCGCTGTTCTGCGCGGACAAGACGATCGATCTGTTGATGAAATCAGGCGCGGCGCAGTATTTGGAGTTCAAAGGAATCGACGAGAGCTTCGTCTACGAAGCTAACGCGGGTTTGGCGAACGTGCCGGATTCTCGAGGATCGATTTTCAGAGACAAGAAGCTTTCACTGAAAGAGAAGAACCAATTGATGAGGTTCTTCAAGCTGGTTCAGCAGCACCTGGATGATACTCAGGAGGAGAAGATTCCCGAGGAGGATTTGGAGATTGCGTTTGTTAGTTTCTTGGAGAAGATGAAGTTGCCGCCTAAGATAAAATCGATTCTTTTGTATGCTATAGCCATGCTAGATTATGACCAAGACAATAACGAGGTTTGTATAGAGTTACTTAAAACAAAAGACGGAATCGATTCTTTAGCTCTATACAGCTCATCTGTCGGAAGGTTTCCCAATGCTCCTGGGGCTTTGCTTTATCCTATTTATGGTGAGGGAGAACTACCACAAGCCTTTTGTCGCCGTGCTGCTGTCAAAGGTTGCATTTATGTTCTAAGAATGTCGGTTGTTTCTCTGCTTATGGATAAGGTTACGGGGTCTTATAAAGGTGTTAGATTAGCTTCAGGTCAGGATTTATATAGCCACCAACTAATCCTGGACCCATCCTTCATGATTCCATCACCATTGTCTTCGTCTCCAAGAGATTTTCCCAGTGAAAAGCTCCAAATGTTGGGTCAGAGAGATATTAAAGGAATGGTGGCTAGGGGAATATGCATCACAAGGAGCTCAATAAAGCCAGATGTATCAAATTGCTCGGTGGTGTATCCTCCTAGATCTTTGTATCCTGAACAGTTGACATCAATCAAAGCTCTTCAGATAGGATCAAATCTTGCTGTTTGTCCTGCAGGAACCTTTATTTTATACTTTTCCACTATGTGCAATGATGCCGATGAAGGAAAGAAGCTACTAAAAGCAGCCATGAATGCTCTTCTTACACTGCCTGTATCTGGAAACTCTGAAAGTATTCCAAGTGTTCAAAGTGATAGTGAAGATATAAAACCCATTGTGCTCTGGAGTGCATTTTATATTCAGAAATTAATTATGTGTAAACTTGAATTTATCAGCTCCACTCCTACACCTGATGGAAATCTGAACTACGATGACCTTTTAGATGCCACCAGGAAGCTATTTAATCAGATGTACCCCGATGAAGAATTCTTTCCAAAGTCAACATCACCTGAAGATCCAACAGATGAGGATGATAATGGGTTAACTCTGGATAGCTAA 1656 0.4583 MTQPQDPFSYPPIDPVNFDLIIVGTALSESVIAAAASAVGKTILHLDPNSFYGSHFASLSLHDLTSYLSSPHSLPSAAATTTDSDDVVVIDFVQQPLCSDAEIATYDESAFLSENSRKFSIDLGGPKALFCADKTIDLLMKSGAAQYLEFKGIDESFVYEANAGLANVPDSRGSIFRDKKLSLKEKNQLMRFFKLVQQHLDDTQEEKIPEEDLEIAFVSFLEKMKLPPKIKSILLYAIAMLDYDQDNNEVCIELLKTKDGIDSLALYSSSVGRFPNAPGALLYPIYGEGELPQAFCRRAAVKGCIYVLRMSVVSLLMDKVTGSYKGVRLASGQDLYSHQLILDPSFMIPSPLSSSPRDFPSEKLQMLGQRDIKGMVARGICITRSSIKPDVSNCSVVYPPRSLYPEQLTSIKALQIGSNLAVCPAGTFILYFSTMCNDADEGKKLLKAAMNALLTLPVSGNSESIPSVQSDSEDIKPIVLWSAFYIQKLIMCKLEFISSTPTPDGNLNYDDLLDATRKLFNQMYPDEEFFPKSTSPEDPTDEDDNGLTLDS* 552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g0726 551 SUPERFAMILY FAD/NAD(P)-binding domain 16 352 IPR036188 -
Gso11g0726 551 Pfam GDP dissociation inhibitor 115 453 IPR018203 GO:0005092|GO:0007264
Gso11g0726 551 Pfam GDP dissociation inhibitor 17 67 IPR018203 GO:0005092|GO:0007264
Gso11g0726 551 Gene3D Guanine Nucleotide Dissociation Inhibitor, domain 2 96 489 - -
Gso11g0726 551 MobiDBLite consensus disorder prediction 527 551 - -
Gso11g0726 551 PIRSF Rab_ger_ger_transf_A_euk 11 100 IPR001738 GO:0005968|GO:0006886|GO:0018344
Gso11g0726 551 PIRSF Rab_ger_ger_transf_A_euk 94 550 IPR001738 GO:0005968|GO:0006886|GO:0018344
Gso11g0726 551 PRINTS Rab GDI/REP protein family signature 19 37 IPR018203 GO:0005092|GO:0007264
Gso11g0726 551 PRINTS Rab GDI/REP protein family signature 37 54 IPR018203 GO:0005092|GO:0007264
Gso11g0726 551 PRINTS Rab GDI/REP protein family signature 135 151 IPR018203 GO:0005092|GO:0007264
Gso11g0726 551 PRINTS Rab GDI/REP protein family signature 185 200 IPR018203 GO:0005092|GO:0007264
Gso11g0726 551 PRINTS Rab GDI/REP protein family signature 287 308 IPR018203 GO:0005092|GO:0007264
Gso11g0726 551 SUPERFAMILY FAD-linked reductases, C-terminal domain 373 487 - -
Gso11g0726 551 Gene3D - 15 529 IPR036188 -
Gso11g0726 551 PANTHER RAB GDP-DISSOCIATION INHIBITOR 14 538 IPR018203 GO:0005092|GO:0007264
Gso11g0726 551 Gene3D Guanine Nucleotide Dissociation Inhibitor, domain 1 168 280 - -
Gso11g0726 551 PANTHER RAB PROTEINS GERANYLGERANYLTRANSFERASE COMPONENT A 14 538 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g0726 Gso-Chr11 6484238 6489117 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g0726 K23460 - gmx:100781501 1057.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso11g0726 11 6484238 6489117 Gso11g0726 11 6484238 6489117 ECH
Gso1g1359 1 50222423 50228041 Gso11g0726 11 6484238 6489117 GST