Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g0639 ATGGAGAACACCGAGGGATCCAGATCTGCGACGAACGGGGTGCTGCCTCTGGCGCGCAAGGTGGCATTGATTACCGGAATTACCGGCCAAGACGGTTCGTACCTGACGGAATTCCTTCTAGACAAGGGTTACGAGGTGCACGGTCTGATCCGTCGCTCCTCGAACTTCAACACGCAGCGCATCGACCACATCTATGTGGATCCCCACAACGCCCACAAGGCCCGCATGAAGCTCCACTACGCCGATCTCTCCGACGCCTCCTCCCTCCGCCGCTGGCTCGACACCATCCTCCCCGACGAGGTCTACAACCTCGCCGCTCAGTCTCACGTCGCCGTCTCCTTCGAGATACCCGACTACACCGCCGACGTCGTCGCCACCGGCGCCCTCCGCCTCCTCGAGGCCGTCCGTTCCCACATCGCCGCCTCCGGCCGCTCCCACATCCGCTACTACCAAGCCGGCTCCTCCGAGATGTTCGGCGCCACCCCTCCGCCGCAGTCCGAAACCACCCCCTTCCACCCCCGCTCCCCCTACGCCGCCTCCAAATGCGCCGCCCACTGGTACACCGTGAACTACCGCGAGGCTTACTCCCTCTTCGCCTGCAACGGCATCCTCTTCAACCACGAGTCCCCCCGCCGCGGCGAGAATTTCGTGACCCGCAAGATCACGCGGGCCGTGGGCCGCATCAAGGTCGGGCTCCAGAGCAAGCTCTTCTTGGGCAACCTCCAGGCCTCCAGAGATTGGGGCTTCGCTGGGGACTACGTTGAAGCCATGTGGCTGATGCTGCAGCAGGAGAAGCCCGATGACTATGTTGTGGCCACTGAAGAGTCCCACACCGTGGAGGAGTTCTTGGAAGTCGCGTTCGGCTATGTGGGACTCAATTGGAGGGACCATGTCGTCATTGACAAGAGATACTTTCGCCCCTCTGAAGTCGATAACCTCAAAGGGGACGCTTCCAAGGCCAAGAAGGTGCTTGGTTGGAAACCTAAAGTGGGGTTTGAGCAGCTTGTGAAGATGATGGTTGACCGGGACATTGAGATGGCTAAGAAAGAGAAGGTTCTTGTTGATGCTGGCTACATTGATGCTCAGCAACAACCTTGA 1098 0.602 MENTEGSRSATNGVLPLARKVALITGITGQDGSYLTEFLLDKGYEVHGLIRRSSNFNTQRIDHIYVDPHNAHKARMKLHYADLSDASSLRRWLDTILPDEVYNLAAQSHVAVSFEIPDYTADVVATGALRLLEAVRSHIAASGRSHIRYYQAGSSEMFGATPPPQSETTPFHPRSPYAASKCAAHWYTVNYREAYSLFACNGILFNHESPRRGENFVTRKITRAVGRIKVGLQSKLFLGNLQASRDWGFAGDYVEAMWLMLQQEKPDDYVVATEESHTVEEFLEVAFGYVGLNWRDHVVIDKRYFRPSEVDNLKGDASKAKKVLGWKPKVGFEQLVKMMVDRDIEMAKKEKVLVDAGYIDAQQQP* 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g0639 365 Pfam GDP-mannose 4,6 dehydratase 23 339 IPR016040 -
Gso11g0639 365 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 20 345 IPR036291 -
Gso11g0639 365 CDD GDP_MD_SDR_e 21 345 - -
Gso11g0639 365 PANTHER GDP-MANNOSE 4,6-DEHYDRATASE 16 360 IPR006368 GO:0008446|GO:0019673
Gso11g0639 365 PANTHER GDP-MANNOSE 4,6 DEHYDRATASE 1-LIKE 16 360 - -
Gso11g0639 365 TIGRFAM gmd: GDP-mannose 4,6-dehydratase 20 346 IPR006368 GO:0008446|GO:0019673
Gso11g0639 365 Gene3D - 213 339 - -
Gso11g0639 365 Hamap GDP-mannose 4,6-dehydratase [gmd]. 20 349 IPR006368 GO:0008446|GO:0019673
Gso11g0639 365 Gene3D - 23 329 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g0639 Gso-Chr11 5708212 5709648 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g0639 23 205 Miscellaneous Gene Families AT4G12250 28.272 4.98e-06 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g0639 K01711 - gmx:100797782 740.725
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso11g0639 11 5708212 5709648 Gso11g0639 11 5708212 5709648 ECH