Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g0607 ATGTCTGGAACTATGTCTCCAAAAGGTTCTTTCAAGAAGAAAGCAATCAATGCCTCAAACATGCTGAGGAATTCTTTGACCAGGAAGGGTAGGCGAAGCAGTAAGGTCATGTCCGTTGAAATCGAGGATGTCCACGATGCTGAGGAGTTGAAAATTGTTGACGAGTTCCGTCAAGCTCTTATTTTGGACGAACTTCTTCCTGCAAAACACGATGATTATCATATGATGCTTAGATTCCTGAAGGCTAGGAAATTTGATATCGAGAAAACAAAGCAAATGTGGTCTGAAATGCTCAAATGGAGGAAGGAATTTGGTGCTGACACCATCACGGAGGACTTCGAATTCAAAGAACTTGATGAAGTCTTGCAATATTATCCCCAAGGCCATCATGGAGTGGACAAAGATGGAAGACCTGTGTACATAGAGAGATTAGGCCAAGTCGATGCCACGAAGATGATGCAAGTCACAACCATGGATCGCTACATCAAATACCACGTAAAGGAGTTTGAGAGGACATTTGATGTTAAGTTTGCAGCTTGTTCAATTGCTGCAAAGAAGCACATAGATCAAAGTACAACTATCCTGGACGTGCAGGGAGTGGGGCTTAAAAGCTTCAGCAAACATGCTAGGGAACTTGTTACTCGCCTTCAGAAGATTGACGGTGACAACTATCCAGAGACCTTGAATCGCATGTTCATCATCAATGCAGGTTCTGGATTTAGGATACTGTGGAACACCGTAAAATCATTCCTTGATCCTAAGACCACGGCAAAAATCAATGTTCTTGGCAACAAGTATGACACCAAATTGCTAGAAATAATTGATGCAAGTGAGTTGCCTGAATTTTTAGGAGGCACTTGTACATGTGCTGATCAAGGAGGCTGTATGCGCTCTGATAAGGGCCCATGGAAGGATGCAGAAGTAATGAGGATGGTTCAGAATGGTGATCACAAATGTTCAAAAAAAAGTGCCTCACAAGGCGAGGAAGAGAAAGAAAATTCTGAGGAACACAAGACTTCCAAATTGGAGGCAAATCACACCCCCCAGCTTTCTCCAGTTGTTGAAGAAGAGGTCCCTGCTACTAAAACTTCCCAGCCCTTATCACCGATGGCTGATAAATCTGCTGTGAAAAAAGTTGATGAGAAAGCTTCCAAGCCTAAGGACTTAGCCCCTACAGCTGATAAAACTGCAGCATCAACTGAGTTTTCGACTGTGATGAAACGCATGGCTGAGTTGGAGGAGAAAATCGTCACCATCAATAATAAGCCCACTGCTATGCCACCTGAGAAGGAGCAAATGCTGAATGCAACTATAACTCGAGCCGATGACTTGGAGAAACAACTTTTGGCTACCAAGAAGGCTCTGGAGGATTCACTTGTTAAGCAAGAAGAGCTTTCGGCTTATCTTGACAAAAAGAAGAAGAAGAAGAAGAAGAGATTTTTCTTCTTTTAA 1452 0.4284 MSGTMSPKGSFKKKAINASNMLRNSLTRKGRRSSKVMSVEIEDVHDAEELKIVDEFRQALILDELLPAKHDDYHMMLRFLKARKFDIEKTKQMWSEMLKWRKEFGADTITEDFEFKELDEVLQYYPQGHHGVDKDGRPVYIERLGQVDATKMMQVTTMDRYIKYHVKEFERTFDVKFAACSIAAKKHIDQSTTILDVQGVGLKSFSKHARELVTRLQKIDGDNYPETLNRMFIINAGSGFRILWNTVKSFLDPKTTAKINVLGNKYDTKLLEIIDASELPEFLGGTCTCADQGGCMRSDKGPWKDAEVMRMVQNGDHKCSKKSASQGEEEKENSEEHKTSKLEANHTPQLSPVVEEEVPATKTSQPLSPMADKSAVKKVDEKASKPKDLAPTADKTAASTEFSTVMKRMAELEEKIVTINNKPTAMPPEKEQMLNATITRADDLEKQLLATKKALEDSLVKQEELSAYLDKKKKKKKKRFFFF* 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g0607 483 PANTHER CRAL-TRIO DOMAIN-CONTAINING PROTEIN YKL091C-RELATED 374 478 - -
Gso11g0607 483 PANTHER CRAL-TRIO DOMAIN-CONTAINING PROTEIN YKL091C-RELATED 9 383 - -
Gso11g0607 483 MobiDBLite consensus disorder prediction 314 343 - -
Gso11g0607 483 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 117 291 IPR001251 -
Gso11g0607 483 CDD SEC14 118 286 IPR001251 -
Gso11g0607 483 SUPERFAMILY CRAL/TRIO domain 117 313 IPR036865 -
Gso11g0607 483 Pfam CRAL/TRIO domain 123 285 IPR001251 -
Gso11g0607 483 MobiDBLite consensus disorder prediction 374 389 - -
Gso11g0607 483 Pfam CRAL/TRIO, N-terminal domain 69 95 IPR011074 -
Gso11g0607 483 SUPERFAMILY CRAL/TRIO N-terminal domain 45 113 IPR036273 -
Gso11g0607 483 MobiDBLite consensus disorder prediction 314 398 - -
Gso11g0607 483 Gene3D - 13 104 - -
Gso11g0607 483 PANTHER PHOSPHATIDYLINOSITOL/PHOSPHATIDYLCHOLINE TRANSFER PROTEIN SFH10-RELATED 374 478 - -
Gso11g0607 483 PANTHER PHOSPHATIDYLINOSITOL/PHOSPHATIDYLCHOLINE TRANSFER PROTEIN SFH10-RELATED 9 383 - -
Gso11g0607 483 Gene3D - 105 317 IPR036865 -
Gso11g0607 483 SMART CRAL_TRIO_N_2 72 97 IPR011074 -
Gso11g0607 483 PRINTS Cellular retinaldehyde-binding protein signature 75 97 - -
Gso11g0607 483 PRINTS Cellular retinaldehyde-binding protein signature 244 263 - -
Gso11g0607 483 PRINTS Cellular retinaldehyde-binding protein signature 277 286 - -
Gso11g0607 483 SMART sec14_4 117 288 IPR001251 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g0607 Gso-Chr11 5403608 5409311 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g0607 53 282 Acyl Lipid Metabolism Gene Families AT5G47730 28.279 4.32e-19 86.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g0607 - - gmx:100796901 928.317
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso11g0607 11 5403608 5409311 Gso11g0607 11 5403608 5409311 ECH