Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g0605 ATGAGAACTTCTTTGGGGAGTTTTTCTTCACCCTTCACAAGCTTCCGTTCCGCCTCATCATGGTTCGAGGTGTACGCCGCTTTCTCCACATTCATGATGCTTCTGAGAACCGCGATCAACGATCTCATACCCCACCAAGTTCGCACCTTCATAGTCACAAAGATAAAGGCTTTGTTCTCAGATCGCCAAAATATTAACCAGGTCTCACTCCAGATCAACGAGATTTGGGATGGCCAAATCAACCAGCTCTTCCAAGCCGCCCAAGAGTATCTCCCTGCTCAAATATCCCACTCTTACAAGTCCCTCAAAGTTGGAAAGCTCCCAAAGCACAAGAACATTGCGGTGGCAGTGGATGGAACACAAGAGGTCGTGGATCTTTTCCAAGGCATCAAGCTCAGCTGGAAGCTCGTTGAGAAAAGCCCCAAAAGCGATTCTGATCACCGCGATCATCATCCTAAGTCTAGCGGTGTTGGTTACGAGAGGAAGTCATTTACTCTAAGCTTTGATGAGAAGCATAGAGATGTAGTAATGAACAAGTACATTAACCACGTTCTAAGCACTTACCAGGACATGCAGACAGAGCAGAAAACCATCAAGATCCATTCCATTGGTGGAAGGTGTTGGCAGAAGAGTGACTTAACTCATCCAGCTTCCTTTGACTCGCTTGCATTGGAACCTGAGCAGAAACAAGCCATTATTGATGATTTGAATCGGTTTTTGCGACGGAAGGAGCTTTACAAGAAGGTGGGGAAGCCTTGGAAACGTGGCTACCTCCTTTATGGGCCTCCCGGGACAGGAAAATCTAGCCTTATTGCTGCTATAGCCAACTACTTGAAGTTTGATGTGTATGATTTGGAGCTAAGCTCTATGTTTTCTAACTCGGAACTCATGCGAGTCATGAGGGAAACAACCAACCGCTCCATCATCGTCATCGAAGACATAGACTGCAACAAAGAGGTGCATGCTCGACCAACAACGAAACCTTTTTCAGATTCAGATTCAGACTTCGACCGCAAGCGTGTTAAGGTTAAGCCTTACAGGTTTACTCTGTCGGGTCTGCTTAACAACATGGATGGTTTGTGGTCAAGTGGTGGAGAGGAGCGAATTATAATATTCACTACTAACCACAGAGAGAGAATTGACCCTGCATTGCTGCGCCCTGGTCGTATGGACATGCACATTCACTTGTCCTTCCTCAAAGGCAAGGCCTTTCGAGTCTTGGCTTCCAATTATTTAGGAATTGAAGATCATTCACTTTTTGAAGAAATTGATGGACTATTGGAGAAATTAGAAGTCACCCCTGCAGTAGTAGCAGAGCAACTGATGAGAAATGAGGATCCTGAAGTTGCTTTGGAAGGACTTGTTGAATTTCTCAAAGAAAAGGACAAAGAAAGCCTACTTAGATTTATGAATGAGACTGCAGACTAA 1428 0.4503 MRTSLGSFSSPFTSFRSASSWFEVYAAFSTFMMLLRTAINDLIPHQVRTFIVTKIKALFSDRQNINQVSLQINEIWDGQINQLFQAAQEYLPAQISHSYKSLKVGKLPKHKNIAVAVDGTQEVVDLFQGIKLSWKLVEKSPKSDSDHRDHHPKSSGVGYERKSFTLSFDEKHRDVVMNKYINHVLSTYQDMQTEQKTIKIHSIGGRCWQKSDLTHPASFDSLALEPEQKQAIIDDLNRFLRRKELYKKVGKPWKRGYLLYGPPGTGKSSLIAAIANYLKFDVYDLELSSMFSNSELMRVMRETTNRSIIVIEDIDCNKEVHARPTTKPFSDSDSDFDRKRVKVKPYRFTLSGLLNNMDGLWSSGGEERIIIFTTNHRERIDPALLRPGRMDMHIHLSFLKGKAFRVLASNYLGIEDHSLFEEIDGLLEKLEVTPAVVAEQLMRNEDPEVALEGLVEFLKEKDKESLLRFMNETAD* 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g0605 475 PANTHER BCS1 AAA-TYPE ATPASE 14 467 - -
Gso11g0605 475 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 118 446 IPR027417 -
Gso11g0605 475 Pfam Domain associated at C-terminal with AAA 43 137 IPR025753 -
Gso11g0605 475 ProSitePatterns AAA-protein family signature. 368 386 IPR003960 GO:0005524|GO:0016887
Gso11g0605 475 SMART AAA_5 253 400 IPR003593 -
Gso11g0605 475 CDD AAA 242 397 - -
Gso11g0605 475 Gene3D - 209 394 IPR027417 -
Gso11g0605 475 Gene3D - 395 466 - -
Gso11g0605 475 PANTHER NUCLEOSIDE TRIPHOSPHATE HYDROLASE SUPERFAMILY PROTEIN, PUTATIVE-RELATED 14 467 - -
Gso11g0605 475 Pfam ATPase family associated with various cellular activities (AAA) 258 396 IPR003959 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g0605 Gso-Chr11 5394238 5396370 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g0605 219 396 Miscellaneous Gene Families AT2G29080 30.108 9.36e-11 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g0605 - K08900 gmx:100787726 913.679
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso11g0605 11 5394238 5396370 Gso11g0605 11 5394238 5396370 ECH