Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g0579 ATGGTGCACAGCGCGTACGATTGTCTGGAACTGGTGCGCGAGTGCCCAGCCAAGATCGAATCCATCGAATCCTACGATTCGAAGCTTCTCGTGGGCTGCTCCGATGGATCGCTCCGAATATTCGCCCCGGAAACGGAATCTTCCTCCTCCAACGGGTCCAAGTCCTACGCGTTGGAGAAGAACCTCGCCGGGTTCGCGAAGAAGTCCGTGCTCTCAATGGCGGTGGTGGAGTCACGAGAGTTCCTCATCTCGCTCTCCGAATCCATCGCCTTCCACAGACTCCCTTCCTTCGAGACCATCGCGGTCATCACCAAGGCCAAGGGCGCCAACGTCTTCTGCTGGGACCACCGCCGTGGATTCCTCTGCTTCGCCAGGCAGAAGCGCGTTTGCATCTTCCGACACGACGGTGGCAGGGGATTTGTGGAGGTGAAAGATTTTGGTGTGGCGGATACGGTGAAGTCCATGTGTTGGTGCGGTGAGAATATATGTTTGGGGATTAGAAGAGAATATGTGATTCTGAATGCTACAAATGGAGCTTTGTCTGAGGTTTTTACTTCTGGAAGACTAGCGCCTCCTCTGGTTGTTTCTCTTCCCTCCGGAGAGCTTCTTCTTGGAAAGGAGAATATTGGGGTTTTTGTGGACCAAAATGGGAAGCTTCTTCCTGAAGGTAGGATTTGTTGGTCAGAAGCTCCTTTGGAAGTTGTAATTCAGAAGCCGTATGCTATAGCTTTGTTGCCCAGATTTGTGGAGATTCGGTCCCTCCGAGCTCCTTATCCTCTGATACAGACAGTTGTTCTTCGAAATGTTCGCCACCTTTGCCAGAGCAATGATTCCGTGATACTTGCTTTGGATAATTCTATTCATGGGCTCTACCCTGTTCCCCTTGGAGCCCAGATAGTCCAGTTAACAGCTTCTGGCAACTTTGAGGAGGCCTTGTCATTGTGCAAGCTTCTTCCACCTGAAGATTCAAGTCTCCGTGCTGCAAAGGAGGGTTCAATTCATATAAGATATGCTCACTATCTTTTTGACAATGGGAGCTATGAAGAGGCTATGGAACATTTTCTGGCATCTCAAATAGAAATAACCTATGTGCTTTCCCTGTATCCATCCATTATCCTTCCAAAGACAACTATTGTTTATGATCCGGAGAAGTTGGACATTTATGGGGACGCTTCATATCTCTCCAGAGCTTCTTCAGGCGTGTCAGATGATATGGAACCCTCATCAACATCTCATATGCCAGAATCTGATGAGAATGCAGCACTTGAATCCAAAAAAATGAACCATAATATGCTTATGGCTCTCATAAAATATTTACAGAAGAAGAGATTTAGTTTTATTGAGAAGGCCACTGCAGAAGGAACTGAAGAAGTCGTTTTTGATGCAGTCGGGGATAACTTTGCATCTTACAATAGGCTTAAGAAAACAAACAAGGGGCGTGGTAATGTACCTGTTAGTTCAGGAGCTCGGGAGATGGCTTCAATGTTGGATACTGCTCTACTCGAAGCTTTGCTTCTAACTGGACAGTCTTCAGTGGCTTTAGAATTACTGAGAGGAGTTAACTACTGTGATTTGAAAATATGTGAGGAAATACTTCGAAAAGGCAACCATCATGTTGCTTTATTAGAACTTTACAAGCACAACTCATTGCACCGGGAGGCTCTTGAACTTCTTCACAAATTGGTGGATGAGTTGAAATCTAGCCAGTCTGAAATTACACAAAGATTCAAACCTGAGGATATTGTGGAGTACCTCAAGCCACTATGTGGGACAGACCCCATACTTGTTCTAGAGTTCTCAATGCTTGTTCTTGAAAGCTGTCCATCTCAAACTATAGACCTCTTTCTGTCCGGAAATATTCCAGCAGATATGGTGAGCTCATATTTGAAGAAGCATTCTCCAAACATGCAAGCTAGGTACTTGGAGCTCATGCTTGCAATGAATGAGAATGCAGTATCTGGCAATTTGCAGAATGAAATGGTGCACATCTATCTTTCTGAAGTACTCGATTGGCATGCTGATTTAAGTGCTCAACAAAAATGGGATGAGAAAGATCATTCCCCAACAAGGAAAAAATTATTGACTGCCTTAGAGAGTATAGCAGGATACAATCCAGAGGCTTTGCTAAAACGTCTTCCACCAGATGCTTTGTATGAAGAGCATGCTATATTGTTGGGGAAAATGAACCGACATGAACTGGCATTATCTTTGTATGTTCTTAAGCTTAATGCTCCAGAATTGGCATTGTCTTATTGTGATCGGGTCTATGAGTCTATGCATCAGCCATCTGCAAAAAATTCCAGCAACATATACCTTGTGCTTTTGCAAATTTATTTGAATCCTCGAAGGACCACAGCAGGTTTCGAAAATAGAATTACAAATCTATTATCCCCACAGAATAAGACTATTCCAAAACTCACTCCTACACCATCCATAAAAAGCAGAGGCCGAGGGTCAAAGAAAATTGCTGCAATAGAGGGTGCAGAGGACACAAAAGTTAGTTTAAGCAGCACTGACAGTGGCAGGAGTGATGGTGATGCAGATGAATATAATGATGGTAGTCCTACTATCATGCTTGATGAGATCCTTGATTTGTTGAGCCGCAGGTGGGATAGAATAAATGGAGCTCAGGCCCTTAAACTTTTACCAAAAGAGACAAAATTACAGGACCTACTTTCATTTCTTGGACCCCTTCTGAGAAAATCTAGTGAAATGTACCGAAATTGTTCGGTGATAAAGAGCTTGAGACAAAGTGAGAACCTTCAGGTGAAAGATGAACTCTATAGTCAGAGGAAAGAAGTTGTGAAGATAACCGGTGATAGCATGTGTTCTCTGTGCCATAAGAAAATAGGGACAAGTGTTTTTGCTGTCTACCCAAATGGTAGCACTCTCGTGCACTTTGTCTGTTTCAGAGATTCTCAAAATATGAAAGCAGTGGGCAAAGGGTCTCAATTGAGGAAGCGATTATGA 2970 0.4397 MVHSAYDCLELVRECPAKIESIESYDSKLLVGCSDGSLRIFAPETESSSSNGSKSYALEKNLAGFAKKSVLSMAVVESREFLISLSESIAFHRLPSFETIAVITKAKGANVFCWDHRRGFLCFARQKRVCIFRHDGGRGFVEVKDFGVADTVKSMCWCGENICLGIRREYVILNATNGALSEVFTSGRLAPPLVVSLPSGELLLGKENIGVFVDQNGKLLPEGRICWSEAPLEVVIQKPYAIALLPRFVEIRSLRAPYPLIQTVVLRNVRHLCQSNDSVILALDNSIHGLYPVPLGAQIVQLTASGNFEEALSLCKLLPPEDSSLRAAKEGSIHIRYAHYLFDNGSYEEAMEHFLASQIEITYVLSLYPSIILPKTTIVYDPEKLDIYGDASYLSRASSGVSDDMEPSSTSHMPESDENAALESKKMNHNMLMALIKYLQKKRFSFIEKATAEGTEEVVFDAVGDNFASYNRLKKTNKGRGNVPVSSGAREMASMLDTALLEALLLTGQSSVALELLRGVNYCDLKICEEILRKGNHHVALLELYKHNSLHREALELLHKLVDELKSSQSEITQRFKPEDIVEYLKPLCGTDPILVLEFSMLVLESCPSQTIDLFLSGNIPADMVSSYLKKHSPNMQARYLELMLAMNENAVSGNLQNEMVHIYLSEVLDWHADLSAQQKWDEKDHSPTRKKLLTALESIAGYNPEALLKRLPPDALYEEHAILLGKMNRHELALSLYVLKLNAPELALSYCDRVYESMHQPSAKNSSNIYLVLLQIYLNPRRTTAGFENRITNLLSPQNKTIPKLTPTPSIKSRGRGSKKIAAIEGAEDTKVSLSSTDSGRSDGDADEYNDGSPTIMLDEILDLLSRRWDRINGAQALKLLPKETKLQDLLSFLGPLLRKSSEMYRNCSVIKSLRQSENLQVKDELYSQRKEVVKITGDSMCSLCHKKIGTSVFAVYPNGSTLVHFVCFRDSQNMKAVGKGSQLRKRL* 990
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g0579 989 MobiDBLite consensus disorder prediction 399 417 - -
Gso11g0579 989 ProSiteProfiles Clathrin heavy-chain (CHCR) repeat profile. 599 786 IPR000547 GO:0006886|GO:0016192
Gso11g0579 989 MobiDBLite consensus disorder prediction 399 418 - -
Gso11g0579 989 ProSiteProfiles Citron homology (CNH) domain profile. 16 279 IPR001180 -
Gso11g0579 989 PANTHER VACUOLAR SORTING PROTEIN 39 1 988 - -
Gso11g0579 989 PANTHER CNH DOMAIN CONTAINING 1 988 IPR032914 GO:0016192
Gso11g0579 989 Pfam Vacuolar sorting protein 39 domain 1 496 604 IPR019452 -
Gso11g0579 989 Pfam Vacuolar sorting protein 39 domain 2 863 971 IPR019453 -
Gso11g0579 989 Pfam CNH domain 27 274 IPR001180 -
Gso11g0579 989 MobiDBLite consensus disorder prediction 828 852 - -
Gso11g0579 989 SUPERFAMILY WD40 repeat-like 26 170 IPR036322 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g0579 Gso-Chr11 5168626 5175570 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g0579 K20183 - gmx:100775609 1933.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso11g0579 11 5168626 5175570 Gso11g0579 11 5168626 5175570 ECH