Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g0349 ATGGCGTCTGTTTCAGCTTTAGCCAAGTACAAGCTCGTCTTCTTGGGTGACCAATCCGTGGGCAAAACCAGCATCATCACTCGCTTCATGTACGATAAATTCGATAACACCTATCAGGCTACAATTGGTATTGATTTTCTATCAAAAACTATGTATCTCGAAGATCGAACTGTTCGACTGCAGTTGTGGGATACAGCTGGCCAGGAAAGATTTAGAAGTCTTATTCCAAGCTACATTAGGGACTCATCTGTAGCTGTTATTGTATATGATGTTGCAAGCCGGCAGACTTTCCTAAATACTGCAAAGTGGATTGAAGAGGTGCGAACAGAGAGAGGCAGTGATGTCATTATTGTTCTTGTTGGGAACAAAACTGATCTTGTCGAGAAAAGACAAGTCTCTATAGAGGAAGGGGAAGCAAAAGCACGTGAGCTCAATGTCATGTTCATTGAAACTAGTGCTAAGGCTGGGTTTAATATAAAGGCCCTATTTCGAAAAATTGCTGCAGCACTACCTGGAATGGAAACACTATCTTCTGCAAAACAAGAAGACATGGTTGATGTAAACTTAAAGTCTACAAATGGCAGTGCTCAGTCTCAACCTCAGTCAAGTGGATGTGCTTGTTAA 624 0.4167 MASVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQTFLNTAKWIEEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAALPGMETLSSAKQEDMVDVNLKSTNGSAQSQPQSSGCAC* 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g0349 207 ProSiteProfiles small GTPase Rho family profile. 3 179 - -
Gso11g0349 207 CDD Rab6 10 170 - -
Gso11g0349 207 SMART ran_sub_2 15 207 - -
Gso11g0349 207 ProSiteProfiles small GTPase Rab1 family profile. 1 207 - -
Gso11g0349 207 PANTHER GTP-BINDING PROTEIN RAB6 1 207 - -
Gso11g0349 207 SMART rab_sub_5 10 173 - -
Gso11g0349 207 Gene3D - 6 204 IPR027417 -
Gso11g0349 207 ProSiteProfiles small GTPase Ras family profile. 5 207 IPR001806 GO:0003924|GO:0005525
Gso11g0349 207 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 9 178 IPR027417 -
Gso11g0349 207 Pfam Ras family 11 169 IPR001806 GO:0003924|GO:0005525
Gso11g0349 207 SMART ras_sub_4 7 173 - -
Gso11g0349 207 SMART rho_sub_3 12 172 IPR001806 GO:0003924|GO:0005525
Gso11g0349 207 PRINTS Transforming protein P21 ras signature 10 31 - -
Gso11g0349 207 PRINTS Transforming protein P21 ras signature 33 49 - -
Gso11g0349 207 PRINTS Transforming protein P21 ras signature 51 73 - -
Gso11g0349 207 PRINTS Transforming protein P21 ras signature 113 126 - -
Gso11g0349 207 PRINTS Transforming protein P21 ras signature 148 170 - -
Gso11g0349 207 PANTHER DRAB5-RELATED 1 207 - -
Gso11g0349 207 TIGRFAM small_GTP: small GTP-binding protein domain 9 166 IPR005225 GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g0349 Gso-Chr11 2999952 3003828 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g0349 K07893 - gmx:100795325 399.823
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso11g0349 11 2999952 3003828 Gso5g0595 5 7086850 7092195 PCT
Gso11g0349 11 2999952 3003828 Gso17g1281 17 12610800 12616211 PCT
Gso5g0595 5 7086850 7092195 Gso11g0349 11 2999952 3003828 PCT
Gso17g1281 17 12610800 12616211 Gso11g0349 11 2999952 3003828 PCT