Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g2141 ATGAATAAGGCTGGGCAATCTCTGAAATGGGTTCTCTTGGATTTGATTCACAAATGCAACGACTTGAGATCCTTCAAGCAAATCCATGCGCATCTTTTGACTTCTGCCCTTGTTACTAATGATTTGGTTGTCACCAAAGCTGCAAACTTTTTGGGAAAACATATCACTGATGTTCATTACCCTTGCAATTTCCTGAAGCAATTTGATTGGAGCTTGAGCTCTTTCCCTTGCAATTTGTTGATTTCAGGTTATGCCTCGGGCCAGTTACCCTGGCTTGCAATCCTGATTTATAGATGGACTGTTAGGAATGGTTTTGTGCCTGATGTGTACACTTTTCCAGCAGTTTTGAAATCTTGTGCTAAGTTTTCTGGGATTGGAGAGGTTAGACAGTTTCATTCAGTGTCTGTTAAGACTGGATTGTGGTGTGATATTTATGTGCAAAACACTCTTGTCCATGTTTATAGCATTTGTGGGGACAATGTTGGTGCTGGCAAGGTGTTTGAGGACATGCTTGTGAGAGATGTGGTCTCTTGGACTGGTTTGATATCTGGGTATGTGAAGACTGGGTTGTTTAATGAGGCCATTTCGTTGTTTTTGAGAATGAATGTGGAGCCTAATGTGGGAACCTTTGTTAGCATACTTGGAGCCTGTGGGAAATTGGGTCGTTTAAATCTGGGGAAGGGAATTCATGGGTTGGTTTTCAAATGTCTGTATGGGGAGGAGTTGGTGGTATGCAATGCTGTGTTGGATATGTATATGAAGTGTGACTCTGTGACTGATGCAAGAAAAATGTTTGATGAGATGCCTGAAAAGGATATTATTTCATGGACTAGTATGATAGGCGGATTAGTGCAGTGCCAGTCTCCCAGGGAATCACTGGACTTGTTCAGTCAAATGCAGGCCTCAGGTTTTGAGCCTGATGGGGTTATACTGACTAGTGTGCTTTCTGCTTGTGCCAGTCTTGGGCTTCTTGATTGTGGCAGATGGGTCCATGAATACATTGATTGCCACCGTATCAAGTGGGATGTTCATATAGGAACGACATTGGTTGACATGTATGCAAAATGTGGTTGCATAGATATGGCACAGCGTATCTTCAATGGAATGCCTTCTAAGAATATCCGCACTTGGAATGCCTATATAGGTGGTCTAGCAATAAATGGATACGGGAAGGAAGCATTGAAACAATTTGAAGATTTGGTTGAGTCTGGCACAAGGCCTAATGAGGTGACATTTCTAGCTGTTTTTACAGCTTGCTGCCATAATGGTTTGGTTGATGAAGGCCGCAAGTATTTCAATGAGATGACAAGTCCTCTCTACAACCTCTCTCCCTGTTTAGAACACTATGGATGCATGGTTGATTTGCTCTGCAGGGCTGGACTGGTAGGGGAAGCTGTGGAGTTAATAAAGACAATGCCTATGCCCCCTGATGTGCAGATCCTAGGAGCTCTTTTGAGTTCCCGCAATACGTATGGGAATGTTGGATTCACCCAAGAAATGTTGAAATCACTTCCGAATGTTGAATTCCAAGATAGTGGAATATATGTGCTTCTTTCTAATCTGTATGCAACTAACAAGAAATGGGCTGAAGTGAGAAGTGTTAGGAGACTGATGAAGCAAAAAGGAATAAGCAAGGCTCCAGGTTCTAGCATCATAAGGGTGGATGGTATGAGTCATGAATTTTTAGTTGGAGACAATAGCCATCCTCAAAGTGAGGAAATTTACGTACTACTAAACATCCTTGCCAATCAAATCTACCTTGAGGGGCATATTAATACCCTTTCTTGA 1788 0.4228 MNKAGQSLKWVLLDLIHKCNDLRSFKQIHAHLLTSALVTNDLVVTKAANFLGKHITDVHYPCNFLKQFDWSLSSFPCNLLISGYASGQLPWLAILIYRWTVRNGFVPDVYTFPAVLKSCAKFSGIGEVRQFHSVSVKTGLWCDIYVQNTLVHVYSICGDNVGAGKVFEDMLVRDVVSWTGLISGYVKTGLFNEAISLFLRMNVEPNVGTFVSILGACGKLGRLNLGKGIHGLVFKCLYGEELVVCNAVLDMYMKCDSVTDARKMFDEMPEKDIISWTSMIGGLVQCQSPRESLDLFSQMQASGFEPDGVILTSVLSACASLGLLDCGRWVHEYIDCHRIKWDVHIGTTLVDMYAKCGCIDMAQRIFNGMPSKNIRTWNAYIGGLAINGYGKEALKQFEDLVESGTRPNEVTFLAVFTACCHNGLVDEGRKYFNEMTSPLYNLSPCLEHYGCMVDLLCRAGLVGEAVELIKTMPMPPDVQILGALLSSRNTYGNVGFTQEMLKSLPNVEFQDSGIYVLLSNLYATNKKWAEVRSVRRLMKQKGISKAPGSSIIRVDGMSHEFLVGDNSHPQSEEIYVLLNILANQIYLEGHINTLS* 596
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g2141 595 Pfam PPR repeat 448 472 IPR002885 -
Gso10g2141 595 Pfam PPR repeat 243 273 IPR002885 -
Gso10g2141 595 Pfam PPR repeat 274 304 IPR002885 -
Gso10g2141 595 Pfam E+ motif 559 578 IPR046849 -
Gso10g2141 595 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 174 204 IPR002885 -
Gso10g2141 595 PANTHER OS04G0488200 PROTEIN 6 191 - -
Gso10g2141 595 PANTHER OS04G0488200 PROTEIN 192 257 - -
Gso10g2141 595 PANTHER OS04G0488200 PROTEIN 257 589 - -
Gso10g2141 595 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 192 257 - -
Gso10g2141 595 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 257 589 - -
Gso10g2141 595 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 6 191 - -
Gso10g2141 595 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 272 306 IPR002885 -
Gso10g2141 595 Pfam PPR repeat family 173 217 IPR002885 -
Gso10g2141 595 Pfam PPR repeat family 372 421 IPR002885 -
Gso10g2141 595 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 373 407 IPR002885 -
Gso10g2141 595 TIGRFAM PPR: pentatricopeptide repeat domain 176 201 IPR002885 -
Gso10g2141 595 TIGRFAM PPR: pentatricopeptide repeat domain 274 307 IPR002885 -
Gso10g2141 595 TIGRFAM PPR: pentatricopeptide repeat domain 410 436 IPR002885 -
Gso10g2141 595 TIGRFAM PPR: pentatricopeptide repeat domain 243 273 IPR002885 -
Gso10g2141 595 Pfam E motif 491 552 IPR046848 -
Gso10g2141 595 Gene3D Tetratricopeptide repeat domain 74 234 IPR011990 GO:0005515
Gso10g2141 595 Gene3D Tetratricopeptide repeat domain 327 561 IPR011990 GO:0005515
Gso10g2141 595 Gene3D Tetratricopeptide repeat domain 235 326 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g2141 Gso-Chr10 48444362 48446805 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g2141 79 591 Glycoside Hydrolase AT3G49170 34.357 3.91e-100 321
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g2141 - - gmx:100815155 1221.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso10g2141 10 48444362 48446805 Gso10g2141 10 48444362 48446805 ECH