Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g2098 ATGGTCACACAGCACGGCATCAAATTCGCCGTCCACCTCATCACCAAACACTTCGGCAAAATCGTCGCTAAAGTATGCGAAAACTTATTTATCCATGGGCCCCTCACTTTGGATCAGTTGGTTCGCTACACCGACCTTACTAAGGACCAAGTCCGAAATTCCCTACTTGTTTTAGTTCAACACAATTGTGTCCAAGCATTTGTTTCTGCTCCTCAAGATGATGATGATGATGCAGACAGATTGAGAGTAAGAACTCAGTACCTGGTGTTGTTTGATAGCATACTCCACCGATTGAGGTTTCCCAAATTCTTGGAGATTGTGTCGCGGAAGCTTGATGAAGAATGTGTGAAGCTGCTTGATGGATTGCTTCGAGATGGTAGGCTTACCCTCAAACAAATGGTTGACAGAGAAAGTCAAAGAAAAGAAAATGCTGTGCCTACAAAAGTTGTACGAGAGACACTCTGTAAACTTTTGACGGCTCGATTTGTTGAACGTTGCCCTGCCCCTGAGCCTGTTGTTTCTACCTCATTTAAGGAAACTACTACTAGGAAGCGGGGTGCCAAGTCTGCCAAGATATTTGAAGCACCAGAGACATTAGAACAACGCGTAGTAGATGCAGCAGTGCCTGGGGATGTAATCAGATTTTCACTCGCTGCAGATACCAGATGTAGTGTTGATAGAGAAACAAACTCAGATGATGCTCAAATGATTAGTGTTGAAGAAGAAGTTGCAAAAGAGGGGCAAATTCTTTGGCGTGCAAATTTCGAGGAGTTTATACGTCATCTTAGGCATAAGGTATTGATTGAGAATGTAAGAACTCAGCATGATGATGGAACTGCTACTGTCTTAAGTGCAGTATTGGAGGCAACAAGAAGTGTACAGAAAAAAGTGAAAACGGAAAATTCAGTTCCCTTGTCACTGGATACAATTATCACAGAGGTGATGAAGACTGATACAGGACGAACTATGACTGTAGATCGTATTAGAGCTTCCCTTGTCCAGTTGGGTTGTTCACCGAGCATGATTTTAGAGGAATCATATAGTATTGATTTGAAGAAAATTATTGAACCGGCTCGAAATGAAGAGGTTGAGTCAATTGTGTTGAAAAGGTATGGAACGGATGGCTACAGAATTTTCAGGCTACTGGCAAAGGATTGCTGTTTTCACGACACAGATCAGATAGCAGCATCTACTCTGGTTGAGAAAAAAGAAGCTTCAAAGCTGCTATACAAGTTATGGAAGGACAACTACTTGTATATGGAGAAAGTAGGTGCAACGGTGGGAGCCAAGCAAACAACTATTTTGATGTGGAAAGTGAATAAGCCTCTACTTTGGGAATATGTACTGGACGAGATGTACCATGCTGCCTTAAATTTGAGCCTAAGAATGGCTTTTGAGCAGGAAAAGGATGAAGAGCTTTTAAAGGTTCCTAAAGACAAGCGTCAGGGGCCAGGGCCACTGCAGAAGAAATACAAAAAGCTACTAAATGTCTGGTTACTCCTGGGATCATCATTGATGAAACTCGATGATGCTCTGATGCTTTTCCATGACTTTTGA 1557 0.4226 MVTQHGIKFAVHLITKHFGKIVAKVCENLFIHGPLTLDQLVRYTDLTKDQVRNSLLVLVQHNCVQAFVSAPQDDDDDADRLRVRTQYLVLFDSILHRLRFPKFLEIVSRKLDEECVKLLDGLLRDGRLTLKQMVDRESQRKENAVPTKVVRETLCKLLTARFVERCPAPEPVVSTSFKETTTRKRGAKSAKIFEAPETLEQRVVDAAVPGDVIRFSLAADTRCSVDRETNSDDAQMISVEEEVAKEGQILWRANFEEFIRHLRHKVLIENVRTQHDDGTATVLSAVLEATRSVQKKVKTENSVPLSLDTIITEVMKTDTGRTMTVDRIRASLVQLGCSPSMILEESYSIDLKKIIEPARNEEVESIVLKRYGTDGYRIFRLLAKDCCFHDTDQIAASTLVEKKEASKLLYKLWKDNYLYMEKVGATVGAKQTTILMWKVNKPLLWEYVLDEMYHAALNLSLRMAFEQEKDEELLKVPKDKRQGPGPLQKKYKKLLNVWLLLGSSLMKLDDALMLFHDF* 519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g2098 518 Pfam RNA polymerase III subunit RPC82 153 327 IPR008806 GO:0003677|GO:0006351
Gso10g2098 518 Gene3D - 254 348 IPR036388 -
Gso10g2098 518 Gene3D - 91 175 IPR036388 -
Gso10g2098 518 PANTHER RNA POLYMERASE III DNA DIRECTED -RELATED 3 518 IPR039748 GO:0003697|GO:0005666
Gso10g2098 518 Pfam RNA polymerase III subunit RPC82 helix-turn-helix domain 10 68 IPR013197 -
Gso10g2098 518 Gene3D - 2 74 IPR036388 -
Gso10g2098 518 Gene3D - 351 440 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g2098 Gso-Chr10 47969300 47977749 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g2098 K03023 - gmx:100803947 994.956
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso10g2098 10 47969300 47977749 Gso10g2098 10 47969300 47977749 ECH
Gso20g1280 20 42852505 42862394 Gso10g2098 10 47969300 47977749 GST