Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g2082 ATGCTATTAGCTAATGTTTTGGGAATTTCAGTTATAAGACTCTCAGGTGGTGGTGCATCGCTGAGTTGTGTGAGAGTGAGAAAGAGAGAGTGTGTGTGTGTGCAGAAGATGTGGCCATTCAGCAGAAAAGGGGCTTCTGGTTTTTCATCATCATCCACGGCAGAGCAAGTCACTGAAGGAATTGATGGAACTGGTCTCACTGCCATTGTCACAGGAGCATCCAGTGGTATTGGCACTGAGACTACACGTGTCCTTTCATTGCGTGGTGTCCATGTGATTATGGGTGTGAGAAATATGCTTGCTGCTAAAGATGTCAAAGAAACATTACTTAAGGAGATTCCCTCCGCTAAAGTTGATGCCATGGAGTTAGATCTCAGTTCATTGGAGTCTGTCAAGAAATTTGCATCAGAGTTTAAGTCCTCTGGTCTTCCATTGAATATGTTGATAAACAATGCAGGAATTATGGCATGTCCTTTCAAGCTCTCTAAAGACAAAATTGAACTACAGTTTGCCACAAATCACTTAGGTCATTTTCTCTTGACCAATCTTTTGTTGGACACTATGAAGAAAACTTCACGTGAAACTAAGAAAGAAGGAAGAATTGTTAATGTCTCCTCTGAGGCTCACCGATTTACATATTCTGAAGGAATCCGTTTTGACAAAATTAACGATGAATCAAGTTACAGCAACTGGCGTGCATATGGGCAGTCAAAGCTTGCCAACATTTTACATGCAAATGAACTTACAAGACGTCTCAAGGAAGATGGGGTAGATATTTCTGCAAATTCTCTTCATCCAGGAGTAATTGCCACCAATCTTTCCCGTCATATCAGTCCAGTGAACGGTCTAACTAAAGCTATTGCAAGACTCGTGCTTAAAAATGTCCAGCAGGGAGCAGCAACAACATGCTATGTAGCATTGCACCCACAAGTGAAGGGAACTAGTGGCAAGTATTTTTCAGCCAGTAATGTGGCCAAAACAACCTCACAGGGGACTGATGCTGATTTGGCAAAAAACCTATGGGATTTCAGCATGGATTTGACCAAGTAA 1050 0.419 MLLANVLGISVIRLSGGGASLSCVRVRKRECVCVQKMWPFSRKGASGFSSSSTAEQVTEGIDGTGLTAIVTGASSGIGTETTRVLSLRGVHVIMGVRNMLAAKDVKETLLKEIPSAKVDAMELDLSSLESVKKFASEFKSSGLPLNMLINNAGIMACPFKLSKDKIELQFATNHLGHFLLTNLLLDTMKKTSRETKKEGRIVNVSSEAHRFTYSEGIRFDKINDESSYSNWRAYGQSKLANILHANELTRRLKEDGVDISANSLHPGVIATNLSRHISPVNGLTKAIARLVLKNVQQGAATTCYVALHPQVKGTSGKYFSASNVAKTTSQGTDADLAKNLWDFSMDLTK* 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g2082 349 Pfam short chain dehydrogenase 67 213 IPR002347 -
Gso10g2082 349 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 65 320 IPR036291 -
Gso10g2082 349 Gene3D - 58 349 - -
Gso10g2082 349 PRINTS Glucose/ribitol dehydrogenase family signature 67 84 IPR002347 -
Gso10g2082 349 PRINTS Glucose/ribitol dehydrogenase family signature 143 154 IPR002347 -
Gso10g2082 349 PRINTS Glucose/ribitol dehydrogenase family signature 193 209 IPR002347 -
Gso10g2082 349 PRINTS Glucose/ribitol dehydrogenase family signature 257 274 IPR002347 -
Gso10g2082 349 PANTHER SHORT-CHAIN DEHYDROGENASE TIC 32 38 349 - -
Gso10g2082 349 CDD retinol-DH_like_SDR_c_like 65 341 - -
Gso10g2082 349 PANTHER RETINOL DEHYDROGENASE 38 349 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g2082 Gso-Chr10 47792782 47798328 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g2082 69 297 Acyl Lipid Metabolism Gene Families AT1G62610 28.926 2.76e-11 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g2082 - - gmx:100783465 638.647
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso10g2082 10 47792782 47798328 Gso10g2082 10 47792782 47798328 ECH