Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g2066 ATGTCTCAGACTATGAAGCTGTGTTCACAGGTCATTGGTGCGATCTCCTTAGTTCTTATATTGGGATCACTAAATGTGAAAGTAGTAGAATGCAAGGTAGGCAGAGGATTGAAAAACACTGAATATTATGCCATAAATTGCCGAAAGCATAGTGCAGTTTTGACAGATTTTGGTGGAGTTGGTGATGGCAAAACATCCAACACAAAGGCCTTTCAATCAGCAATAAGAAAACTCGGCCAATATGCATCTGATGGGGGTGCACAACTTATTGTGCCACCTGGAAAATGGCTAACAGGACCTTTTAATCTTACAAGCCATTTCACTCTTTTTCTCCACAAGGATGCTGTTATTCTTGCATCTCAGGTTGAATCAGAATGGCCCCAACTTCCTGTACTGCCTTCATATGGAAGAGGAAGAGATGCTCCCGGAGGAAGGTTTAGCAGTCTAATTTTTGGAACTCACCTTACCGATGTTGTAATTACCGGTCACAATGGTACTATTGATGGGCAAGGATCTTATTGGTGGGACAAGTTCCACAAGAACCAATTGAATCTCACCAGGCCATACATGATTGAGATCATGTACTCTGATCAAATCCAAATATCAAATCTCACTTTGGTCAACTCCCCATCCTGGTTTGTCCATCCAATTTACAGCAGTAACATAACAATAAAAGGGCTTACCATTCTCGCACCAGTGGACTCTCCAAACACAGATGGAATTGACCCAGATTCATGTACAAACACTAGGATTGAAGACTGCTACATTGTTTCTGGTGATGATTGTGTGGCAGTAAAAAGTGGTTGGGATGAGTATGGAATTAAATTTGGAAAGCCAACTCAACACCTAGTCATTAGAAGGCTCACATGTATTTCCCCTGATAGTGCCATGATTGCTTTAGGGAGTGAAATGTCTGGTGGAATCCAAGATGTTAGAGTTGAAGATATCACTGCCATCAACACTCAATCAGCAGTTAGAATCAAAACAGCAGTTGGTAGAGGTGGATATGTTAAAGACATATTTGTCAAAGGAATGACCCTCAGCACCATGAAATATGTATTTTGGATGACTGGCTCTTATGGATCACACCCTGACCCTGCCTTTGATCCCAAAGCACTTCCTAATATTACTGGAATAAATTACAGAGATGTTGTTGCAACGAATGTCACATATTCTGCAAAACTTGAAGGAATTTCTAATGACCCTTTCACAGGAATCTGCATTTCTAATGTGAGTATCCAAGTGAGTGAACAAAAGAAGAAGCTTCAGTGGAATTGCACTGATGTTGCTGGAGTTACGAGCAATGTCACTCCTAACACTTGTCAATTGTTGCCAGAGAAAGGGAAATTCGATTGTCCTTTTCCCAATGACAAACTGTCCATTGAAAATGTTCAGTTGAAGACCTGTTCCATTAAAAAGGTCTTCTAA 1428 0.4069 MSQTMKLCSQVIGAISLVLILGSLNVKVVECKVGRGLKNTEYYAINCRKHSAVLTDFGGVGDGKTSNTKAFQSAIRKLGQYASDGGAQLIVPPGKWLTGPFNLTSHFTLFLHKDAVILASQVESEWPQLPVLPSYGRGRDAPGGRFSSLIFGTHLTDVVITGHNGTIDGQGSYWWDKFHKNQLNLTRPYMIEIMYSDQIQISNLTLVNSPSWFVHPIYSSNITIKGLTILAPVDSPNTDGIDPDSCTNTRIEDCYIVSGDDCVAVKSGWDEYGIKFGKPTQHLVIRRLTCISPDSAMIALGSEMSGGIQDVRVEDITAINTQSAVRIKTAVGRGGYVKDIFVKGMTLSTMKYVFWMTGSYGSHPDPAFDPKALPNITGINYRDVVATNVTYSAKLEGISNDPFTGICISNVSIQVSEQKKKLQWNCTDVAGVTSNVTPNTCQLLPEKGKFDCPFPNDKLSIENVQLKTCSIKKVF* 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g2066 475 PANTHER PECTIN LYASE-RELATED 15 470 - -
Gso10g2066 475 Pfam Glycosyl hydrolases family 28 148 430 IPR000743 GO:0004650|GO:0005975
Gso10g2066 475 Gene3D - 38 442 IPR012334 -
Gso10g2066 475 PANTHER ENDO-POLYGALACTURONASE-LIKE PROTEIN 15 470 - -
Gso10g2066 475 SMART pbh1 246 267 IPR006626 -
Gso10g2066 475 SMART pbh1 308 329 IPR006626 -
Gso10g2066 475 SMART pbh1 376 410 IPR006626 -
Gso10g2066 475 SMART pbh1 219 245 IPR006626 -
Gso10g2066 475 SUPERFAMILY Pectin lyase-like 47 445 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g2066 Gso-Chr10 47641233 47644138 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g2066 17 469 Glycoside Hydrolase AT3G48950 67.826 0.0 662
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g2066 - - gmx:100795453 972.615
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso10g2066 10 47641233 47644138 Gso10g2066 10 47641233 47644138 ECH