Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g2056 ATGACCGTTAATGATATATGGAATCGTGTGATTGTTAATAATAAGTTGTTGCTAACAACGAGAGTGTCTCCCCATAACAGCAACTGTAGCGTCACGATGCTATGTAGTAAAAAAGTTTCTAACAGTTTTTCTCCATGCCGCTTCCGAGAAACTTGCTTGCAGGTTCTCTCTCTCTGCAACTCACAAACCCTGAAGGAGGGAGCATGTGTTCATAGCCCAATTATCAAAGTGGGTCTTCAACATGACTTGTATTTGAGCAACAATTTATTGTGTTTGTACGCCAAATGCTTTGGAGTTGGACAAGCACGCCATCTCTTCGATGAAATGCCTCATAGGGATGTTGTGTCGTGGACTACACTCCTTTCTGCTCACACCAGGAACAAGCATCATTTTGAAGCTCTTCAATTGTTTGACATGATGCTTGGTTCTGGTCAATGCCCCAATGAGTTCACCTTGTCCAGTGCCTTAAGATCGTGTTCTGCCTTGGGAGAGTTTGAGTTTGGGGCTAAAATTCATGCCTCTGTGGTAAAGCTTGGGTTGGAGCTGAATCATGTTCTGGGTACCACTTTGGTTGATTTGTACACCAAGTGTGATTGCACTGTGGAACCACACAAATTGCTTGCGTTTGTGAAAGATGGTGATGTTGTATCTTGGACAACGATGATCTCTTCATTGGTGGAAACTAGTAAATGGAGTGAAGCTCTACAACTCTATGTCAAAATGATTGAAGCCGGTATTTACCCGAATGAGTTCACATTTGTTAAACTCTTAGGCATGCCTTCTTTTCTTGGTTTGGGGAAGGGTTATGGGAAAGTACTGCATTCACAGTTAATCACATTTGGTGTGGAAATGAATTTGATGTTGAAGACAGCCATTATTTGTATGTATGCAAAATGTAGACGGATGGAAGATGCTATTAAGGTCTCACAACAGACACCTAAATACGATGTGTGCTTATGGACTTCCATAATCTCTGGATTTGTTCAAAATTCGCAGGTTAGAGAGGCTGTCAATGCATTGGTTGATATGGAATTGTCTGGAATTCTACCAAATAATTTTACGTATGCTAGTTTATTGAATGCTAGCTCCTCAGTTTTATCATTGGAGCTTGGGGAACAGTTTCATTCAAGGGTTATCATGGTTGGATTGGAGGGTGATATTTATGTAGGAAATGCATTGGTTGATATGTACATGAAATGCTCCCATACCACAACAAATGGTGTGAAAGCTTTTAGAGGGATAGCCTTGCCGAATGTCATCTCTTGGACTTCTTTGATTGCTGGTTTTGCAGAACATGGTTTTGAAGAAGAATCTGTTCAGTTGTTTGCTGAGATGCAAGCAGCTGGAGTGCAACCAAATTCCTTTACACTATCTACTATCCTTGGAGCTTGCAGCAAGATGAAATCTATTATTCAAACAAAGAAACTCCATGGATATATCATAAAAACACAAGTAGACATTGACATGGCTGTTGGGAATGCTCTTGTAGATGCTTATGCTGGAGGGGGGATGGCAGATGAAGCATGGTCTGTTATTGGCATGATGAACCATAGAGATATCATCACATACACAACTTTAGCAGCAAGATTAAACCAACAGGGAGATCACGAAATGGCATTAAGAGTCATCACTCACATGTGCAATGATGAGGTTAAGATGGATGAATTTAGCTTGGCAAGTTTTATATCAGCTGCAGCTGGCTTAGGCATTATGGAAACTGGAAAGCAACTCCATTGTTATTCTTTCAAATCAGGTTTCGAGAGATGTAACTCAGTCTCAAATAGCCTAGTTCACTCGTACAGCAAGTGTGGTAGCATGCGCGATGCATACAGAGTTTTCAAAGATATAACTGAGCCAGATAGAGTGTCATGGAATGGTTTGATCTCTGGATTGGCATCAAATGGACTTATATCCGATGCTCTTTCTGCCTTTGATGACATGAGGTTAGCAGGAGTTAAACCCGATTCTGTCACATTCTTATCACTGATTTTTGCTTGCAGCCAAGGTAGTTTATTGAATCAGGGTCTTGATTATTTCTATTCCATGGAAAAAACATATCATATAACACCAAAGTTGGATCACTATGTGTGTTTAGTTGATCTCCTCGGTAGAGGTGGTCGCCTAGAGGAAGCTATGGGAGTTATTGAAACAATGCCTTTCAAGCCAGATTCTGTAATTTATAAAACCTTATTAAACGCTTGCAACTTACATGGAAATGTGCCACTGGGAGAAGATATGGCAAGGAGATGTCTCGAGCTTGATCCATGTGACCCTGCAATATACTTGCTGCTTGCAAGCTTGTATGACAATGCTGGACTCCCTGATTTTGGTGACAAGACTCGCAAGCTGATGAGAGAAAGAGGCTTAAGAAGAAGTCCAAGGCAGTGTTGGATGGAGGTAAAAAGTAAGATTTATCTCTTCTCTGCAAGAGAGAAGATAGGTAATGATGAGATCAATGAAAAGCTAGAGTCTCTTATAACTGAAATAAAGAATAGAGGGTATCCATACCAAGAGAGTGAAGACAAGTTATACCACTCAGAGCAATTGGCCCTTGCATTTGGTGTTCTTAGCGTGCCAACTTTGGCTCCAATACGCATAAATAAAAACTCACTTATCTGCACTCACTGTCATTCTTTTATAATGCTTCTGACACAATTTGTTGATAGAGAGATAATTGTGAGGGATAGGAAACGATTCCATGTCTTTAAGGACGGCCAGTGTTCATGTAGAGGTCACTCATGA 2742 0.4063 MTVNDIWNRVIVNNKLLLTTRVSPHNSNCSVTMLCSKKVSNSFSPCRFRETCLQVLSLCNSQTLKEGACVHSPIIKVGLQHDLYLSNNLLCLYAKCFGVGQARHLFDEMPHRDVVSWTTLLSAHTRNKHHFEALQLFDMMLGSGQCPNEFTLSSALRSCSALGEFEFGAKIHASVVKLGLELNHVLGTTLVDLYTKCDCTVEPHKLLAFVKDGDVVSWTTMISSLVETSKWSEALQLYVKMIEAGIYPNEFTFVKLLGMPSFLGLGKGYGKVLHSQLITFGVEMNLMLKTAIICMYAKCRRMEDAIKVSQQTPKYDVCLWTSIISGFVQNSQVREAVNALVDMELSGILPNNFTYASLLNASSSVLSLELGEQFHSRVIMVGLEGDIYVGNALVDMYMKCSHTTTNGVKAFRGIALPNVISWTSLIAGFAEHGFEEESVQLFAEMQAAGVQPNSFTLSTILGACSKMKSIIQTKKLHGYIIKTQVDIDMAVGNALVDAYAGGGMADEAWSVIGMMNHRDIITYTTLAARLNQQGDHEMALRVITHMCNDEVKMDEFSLASFISAAAGLGIMETGKQLHCYSFKSGFERCNSVSNSLVHSYSKCGSMRDAYRVFKDITEPDRVSWNGLISGLASNGLISDALSAFDDMRLAGVKPDSVTFLSLIFACSQGSLLNQGLDYFYSMEKTYHITPKLDHYVCLVDLLGRGGRLEEAMGVIETMPFKPDSVIYKTLLNACNLHGNVPLGEDMARRCLELDPCDPAIYLLLASLYDNAGLPDFGDKTRKLMRERGLRRSPRQCWMEVKSKIYLFSAREKIGNDEINEKLESLITEIKNRGYPYQESEDKLYHSEQLALAFGVLSVPTLAPIRINKNSLICTHCHSFIMLLTQFVDREIIVRDRKRFHVFKDGQCSCRGHS* 914
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g2056 913 Pfam DYW family of nucleic acid deaminases 843 911 IPR032867 GO:0008270
Gso10g2056 913 Gene3D Tetratricopeptide repeat domain 273 366 IPR011990 GO:0005515
Gso10g2056 913 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 113 147 IPR002885 -
Gso10g2056 913 PANTHER OS03G0861900 PROTEIN 301 802 - -
Gso10g2056 913 PANTHER OS03G0861900 PROTEIN 63 200 - -
Gso10g2056 913 PANTHER OS03G0861900 PROTEIN 204 300 - -
Gso10g2056 913 Pfam PPR repeat family 316 361 IPR002885 -
Gso10g2056 913 Pfam PPR repeat family 417 465 IPR002885 -
Gso10g2056 913 Pfam PPR repeat family 214 257 IPR002885 -
Gso10g2056 913 Pfam PPR repeat family 112 159 IPR002885 -
Gso10g2056 913 Pfam PPR repeat family 619 666 IPR002885 -
Gso10g2056 913 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 620 654 IPR002885 -
Gso10g2056 913 Gene3D Tetratricopeptide repeat domain 18 167 IPR011990 GO:0005515
Gso10g2056 913 Gene3D Tetratricopeptide repeat domain 168 272 IPR011990 GO:0005515
Gso10g2056 913 Gene3D Tetratricopeptide repeat domain 589 805 IPR011990 GO:0005515
Gso10g2056 913 Gene3D Tetratricopeptide repeat domain 367 472 IPR011990 GO:0005515
Gso10g2056 913 Gene3D Tetratricopeptide repeat domain 473 581 IPR011990 GO:0005515
Gso10g2056 913 TIGRFAM PPR: pentatricopeptide repeat domain 622 656 IPR002885 -
Gso10g2056 913 TIGRFAM PPR: pentatricopeptide repeat domain 420 453 IPR002885 -
Gso10g2056 913 TIGRFAM PPR: pentatricopeptide repeat domain 319 351 IPR002885 -
Gso10g2056 913 TIGRFAM PPR: pentatricopeptide repeat domain 115 149 IPR002885 -
Gso10g2056 913 TIGRFAM PPR: pentatricopeptide repeat domain 216 250 IPR002885 -
Gso10g2056 913 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 316 350 IPR002885 -
Gso10g2056 913 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 214 248 IPR002885 -
Gso10g2056 913 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 418 452 IPR002885 -
Gso10g2056 913 PANTHER OS07G0578800 PROTEIN-RELATED 63 200 IPR045215 GO:0003723|GO:0009451
Gso10g2056 913 PANTHER OS07G0578800 PROTEIN-RELATED 204 300 IPR045215 GO:0003723|GO:0009451
Gso10g2056 913 PANTHER OS07G0578800 PROTEIN-RELATED 301 802 IPR045215 GO:0003723|GO:0009451
Gso10g2056 913 Pfam PPR repeat 493 518 IPR002885 -
Gso10g2056 913 Pfam PPR repeat 695 718 IPR002885 -
Gso10g2056 913 Pfam PPR repeat 594 616 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g2056 Gso-Chr10 47574686 47577516 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g2056 133 912 Glycoside Hydrolase AT3G49170 32.222 6.94e-140 436
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g2056 - - gmx:100791770 1836.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso10g2056 10 47574686 47577516 Gso10g2056 10 47574686 47577516 ECH