Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g1610 ATGTTCTACTTCCTCAAAAGATTGTGCCTTTTATGTTTCCTCTTGCTATCCTTTGATGTTTCACTGTGTTCATGTGCTTCACTCAGAGACTTGGCTTCTTGCTTGGATAATCACGATATCAAAAACTTTACCACGCTCCCTTACAAAGAACATGATCATTCCTCTGCCTATAATTACTACAAAATTCTCAATTTTTCCATCCAAAACCTTCGGTTCGCAGAACCCGTGATTCCTAAGCCGATAGCCATTGTACTGCCAGAGAGTTTGGAGCAGCTGCAGAAAAGTGTAGCATGCTGTAGAGAAGGCTTCATGGAAATAAGAGTAAGATGTGGTGGACACAGCTATGAAGGGACTTCATATGTTGCTGATGATGGCACTCCTTTTGTCATCATTGACATGATGAATTTGAACCATGTTTGGGTGGACATGGAGACAGAAACAGCATGGGTTGAAGGTGGTGCAACATTGGGAGAGACTTACTATGCAATCTCTCAGGCAAGCAATGAACATGGATTCTCAGGTGGGTCATGTCCAACTGTTGGAGTTGGAGGACACATTGGTGGTGGTGGATTTGGAATTTTGTCTAGAAAGTATGGTCTCGCGGCAGATAACGTGGTGGATGCCCTTCTAGTCAATGCTGACGGAAAATTGTTCGACCGCGAAACCATGGGAGAAGATGTGTTTTGGGCCATTAGAGGAGGAGGAGGTGGTCTTTGGGGGATCATTTATGCCTGGAAAATCAAGGTGTTGAAATTGCCTCAAGTTGTAACTAGTTTCACTGTATCAAGAACTGGCACAAAAAGGCATGTTGCCAATCTAGTGCACAAATGGCAAAATGTAGCACCAAACTTGGAAGATGACTTCTACTTGTCATGCTTTGTTGGTGCTGGCTTGCCTCAAGCTAAAACCAAAGGGTTATCAACAACATTTAACGGCTTCTATCTCGGTCCTAGGGCCGGTGCCATATCCATCCTAGACCATGCCTTTCCTGAGTTGGGTATTGTAGAAGAAGAATGCATAGAAATGAGTTGGATTCAGTCAACTGTTTTCTTCTCTGGCCTAAGTGATGGAGCCTCGGTCTCTGACTTGAACAACAGGTATCTGCAAGAAAAACAATATTTCAAGGCTAAATCAGATTATGTAAAGAAACATGTTCCTCTTGTGGGCATAGAAACTGCACTAGACATCCTAGAAAAGGAGCCTAAGGGATATGTTATTTTGGACCCTTATGGTGGAAAGATGCATAATATAAGCAGTGAATCTATTGCTTTTCCCCACAGAAGAGGAAACTTGTTTACAATTCAGTATCTGATATATTGGAAAGAAGCTGACAATGACAAAAACAGTGATTATGTTGATTGGATAAGAGGGTTCTATGCTGCTATGACTCCCTTTGTCTCATGGGGTCCAAGGGCTGCGTATGTTAATTACATGGACTTTGACCTTGGAGTGATGGAGCGGATTAGCAATGGTGCTAATATGAAAGATGTTGTGGAACATGCAAGGGTTTGGGGTGAAAAGTACTTCTTGAGTAACTATGACAGGTTGGTGAGGGCCAAGACTCTGATTGATCCTAACAATGTTTTCACCAATGACCAGGGCATTCCTCCCATATCTTTGACCATTTCTGATGTCAAACCACAGAGCAAATAA 1653 0.4253 MFYFLKRLCLLCFLLLSFDVSLCSCASLRDLASCLDNHDIKNFTTLPYKEHDHSSAYNYYKILNFSIQNLRFAEPVIPKPIAIVLPESLEQLQKSVACCREGFMEIRVRCGGHSYEGTSYVADDGTPFVIIDMMNLNHVWVDMETETAWVEGGATLGETYYAISQASNEHGFSGGSCPTVGVGGHIGGGGFGILSRKYGLAADNVVDALLVNADGKLFDRETMGEDVFWAIRGGGGGLWGIIYAWKIKVLKLPQVVTSFTVSRTGTKRHVANLVHKWQNVAPNLEDDFYLSCFVGAGLPQAKTKGLSTTFNGFYLGPRAGAISILDHAFPELGIVEEECIEMSWIQSTVFFSGLSDGASVSDLNNRYLQEKQYFKAKSDYVKKHVPLVGIETALDILEKEPKGYVILDPYGGKMHNISSESIAFPHRRGNLFTIQYLIYWKEADNDKNSDYVDWIRGFYAAMTPFVSWGPRAAYVNYMDFDLGVMERISNGANMKDVVEHARVWGEKYFLSNYDRLVRAKTLIDPNNVFTNDQGIPPISLTISDVKPQSK* 551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g1610 550 Pfam FAD binding domain 80 218 IPR006094 GO:0050660
Gso10g1610 550 ProSiteProfiles PCMH-type FAD-binding domain profile. 76 252 IPR016166 GO:0071949
Gso10g1610 550 Pfam Berberine and berberine like 473 536 IPR012951 GO:0016491|GO:0050660
Gso10g1610 550 Gene3D - 30 136 IPR016167 -
Gso10g1610 550 SUPERFAMILY FAD-binding/transporter-associated domain-like 64 253 IPR036318 GO:0050660
Gso10g1610 550 PANTHER FAD-BINDING BERBERINE FAMILY PROTEIN 17 541 - -
Gso10g1610 550 Gene3D - 141 537 IPR016169 -
Gso10g1610 550 Gene3D - 255 469 - -
Gso10g1610 550 PANTHER OS08G0158400 PROTEIN 17 541 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g1610 Gso-Chr10 42625007 42627279 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g1610 29 536 Miscellaneous Gene Families AT1G30760 41.748 4.60e-129 386
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g1610 - - gmx:100776134 1090.49
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso10g1610 10 42625007 42627279 Gso10g1610 10 42625007 42627279 ECH