Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g1314 ATGATGGGGCACAAGTATTTGTGGTTGGTCTTTTGCTTGTGGGCTTTAACATGCTCACTTCTTCCTTCTTTCTCCTTTGGACTAATGAGAATTGGTTTGAAGAAGAGAGATCTAGATCTTGATAGTATCAGAGCAGCTAGAATGGTAAGAGAAAAGCCAAGATTAGGCAGACCTGTGTTGGGTGCGTATGATCATGATCTTGGCAAACCAATTGACGAGGGCATAGTACCTTTGAAAAATTATTTGGATGCACAATATTATGGAGAGATTGGAATTGGCACACCCCCACAGAAATTTAATGTCATATTTGATACCGGTAGTTCCAACCTCTGGGTTCCATCATCAAAGTGCTATTTTTCTATTGCGTGCTATACCCATCATTGGTACAAGTCAAAGAAATCCAAAACATATACCAAAAATGGAACATCATGTAAAATAGGATATGGATCTGGATCAATATCTGGTTTTTTCAGTAAAGATCATGTTAAAGTTGGTGATGTTGTTGTCAAGAATCAGGATTTCATCGAGGCTACCCGAGAAGGAAGTCTTTCCTTTGTGTTAGCTAAGTTTGATGGATTACTTGGGCTTGGGTTTCAGGAGATCTCAGTTGAAAATGCTGTGCCAGTATGGTACAATATGGTGAAGCAAAATCTTGTAAGCGAACAGGTGTTCTCTTTTTGGCTCAATGGTGATCCAAAAGCGAAAGATGGTGGTGAACTAATTTTTGGAGGTATTGATCCTAAACACTTCAAAGGAGATCATATTTATGTCCCAGTTACTAAAAAGGGCTACTGGCAGATTGAAATGGGAGATTTTTTTATTGGAGGTCTCTCAACAGGTGTTTGTGAGGGTGGCTGTGCTGCTATTGTGGATTCAGGAACATCTTTGCTTGCTGGTCCAACTACTGTTGTAACTGAAATCAATCATGCTATTGGAGCTGAAGGAGTTCTAAGTGTAGAATGTAAGGAAGTTGTTTCTGAATATGGAGAATTGTTATGGGATCTCTTGGTATCAGGGGTACGACCTGATGATGTATGCTCACAGGTTGGTTTATGTTTCAAAAGGGCTAAATCAGAGAGCAATGGAATTGAGATGGTGACCGAAAAGGGACAAAGAGAGTTATCAGCTAAAGATACTGCTTTGTGCACTTCCTGTCAGATGCTTGTGGTTTGGATTCAGAATCAACTAAAACAAAAGAAGACCAAGGAGATAGTATTCAACTATGTAAATCAGCTGTGCGAGAGCTTGCCAAGTCCAAATGGAGAGTCAGTAGTAGACTGTAATAGCATTTATGGATTGCCAAACATCACGTTTACTGTTGGAGACAAACCTTTCACCCTCACCCCTGAGCAGTATATTCTGAAAACTGGAGAAGGCATTGCAGAAGTTTGCCTTAGTGGGTTTATTGCTTTTGACATTCCTCCTCCTCGAGGTCCTCTCTGGATTCTTGGCGATGTTTTCATGAGGGTATATCACACCGTCTTTGACTATGGGAACCTCCGAGTTGGTTTCGCCAAAGCTGCCTAA 1527 0.4073 MMGHKYLWLVFCLWALTCSLLPSFSFGLMRIGLKKRDLDLDSIRAARMVREKPRLGRPVLGAYDHDLGKPIDEGIVPLKNYLDAQYYGEIGIGTPPQKFNVIFDTGSSNLWVPSSKCYFSIACYTHHWYKSKKSKTYTKNGTSCKIGYGSGSISGFFSKDHVKVGDVVVKNQDFIEATREGSLSFVLAKFDGLLGLGFQEISVENAVPVWYNMVKQNLVSEQVFSFWLNGDPKAKDGGELIFGGIDPKHFKGDHIYVPVTKKGYWQIEMGDFFIGGLSTGVCEGGCAAIVDSGTSLLAGPTTVVTEINHAIGAEGVLSVECKEVVSEYGELLWDLLVSGVRPDDVCSQVGLCFKRAKSESNGIEMVTEKGQRELSAKDTALCTSCQMLVVWIQNQLKQKKTKEIVFNYVNQLCESLPSPNGESVVDCNSIYGLPNITFTVGDKPFTLTPEQYILKTGEGIAEVCLSGFIAFDIPPPRGPLWILGDVFMRVYHTVFDYGNLRVGFAKAA* 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g1314 508 ProSiteProfiles Peptidase family A1 domain profile. 86 505 IPR033121 -
Gso10g1314 508 SUPERFAMILY Acid proteases 8 507 IPR021109 -
Gso10g1314 508 Gene3D - 316 417 - -
Gso10g1314 508 SMART sapb_4 280 352 IPR008139 -
Gso10g1314 508 Gene3D Acid Proteases 245 508 IPR021109 -
Gso10g1314 508 PRINTS Pepsin (A1) aspartic protease family signature 92 112 IPR001461 GO:0004190|GO:0006508
Gso10g1314 508 PRINTS Pepsin (A1) aspartic protease family signature 238 251 IPR001461 GO:0004190|GO:0006508
Gso10g1314 508 PRINTS Pepsin (A1) aspartic protease family signature 288 299 IPR001461 GO:0004190|GO:0006508
Gso10g1314 508 PRINTS Pepsin (A1) aspartic protease family signature 481 496 IPR001461 GO:0004190|GO:0006508
Gso10g1314 508 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 101 112 IPR001969 GO:0004190|GO:0006508
Gso10g1314 508 SUPERFAMILY Saposin 317 417 IPR011001 -
Gso10g1314 508 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 288 299 IPR001969 GO:0004190|GO:0006508
Gso10g1314 508 ProSiteProfiles Saposin B type domain profile. 378 419 IPR008139 -
Gso10g1314 508 ProSiteProfiles Saposin B type domain profile. 316 356 IPR008139 -
Gso10g1314 508 Pfam Saposin-like type B, region 1 381 417 IPR007856 GO:0006629
Gso10g1314 508 PANTHER BETA-SITE APP-CLEAVING ENZYME, ISOFORM A-RELATED 6 508 IPR001461 GO:0004190|GO:0006508
Gso10g1314 508 Pfam Saposin-like type B, region 2 320 352 IPR008138 -
Gso10g1314 508 Pfam Eukaryotic aspartyl protease 85 507 IPR033121 -
Gso10g1314 508 Gene3D Acid Proteases 29 244 IPR021109 -
Gso10g1314 508 PANTHER FUNGAL PROTEINASE A, ASPARTIC PROTEINASE SUPERFAMILY PROTEIN 6 508 - -
Gso10g1314 508 CDD phytepsin 76 506 IPR033869 GO:0004190
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g1314 Gso-Chr10 39406641 39411561 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g1314 K08245 - gmx:100776327 1016.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1898 19 47720202 47724905 Gso10g1314 10 39406641 39411561 PCT
Gso3g1935 3 44905312 44910130 Gso10g1314 10 39406641 39411561 PCT
Gso10g1314 10 39406641 39411561 Gso19g1898 19 47720202 47724905 PCT
Gso10g1314 10 39406641 39411561 Gso3g1935 3 44905312 44910130 PCT