Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g0373 ATGGGTCAGGGAACTCCGGGCGGCATGAACCGGCAGGGCGACCGGAAGCCGGACGGCGGCGACAAGAAGGAGAAGAAGTTCGAGCCGGCGGCGCCGCCAGCACGCGTGGGGCGGAAACAGCGGAAGCAGAAGGGCCCGGAGGCGGCGGCGCGGCTGCCGACGGTGACTCCGGTGACGAAGTGCAAGCTGCGGCTGCTGAAGCTGGAGCGGATCAAGGACTACCTACTGATGGAGGAAGAGTTCGTGGCGAATCAGGAGCGACTCAAGCCGCAGGAGGAGAAGGCCGAGGAAGACAGATCCAAGGTCGACGATCTCCGAGGCTCTCCCATGAGCGTCGGAAATCTCGAAGAGCTCATCGACGAGAATCACGCTATTGTTTCCTCCTCCGTCGGGCCTGAGTATTACGTCGGAATCTTGTCTTTCGTCGATAAGGATCAGTTGGAGCCTGGTTGTGCTATTTTGATGCATAATAAGGTTCTTTCTGTTGTTGGGCTTCTTCAAGATGAAGTTGATCCAATGGTCTCTGTTATGAAGGTCGAGAAAGCTCCTCTGGAATCGTATGCTGACATTGGTGGTTTAGATGCCCAAATACAGGAAATTAAAGAAGCAGTTGAGCTACCCCTGACACATCCTGAACTATATGAAGACATTGGTATCAAGCCTCCTAAGGGGGTCATTTTATATGGAGAACCTGGTACTGGGAAGACCTTGCTTGCGAAGGCCGTGGCAAACTCAACATCAGCAACATTCTTGCGCGTTGTTGGTAGTGAATTGATACAAAAGTACTTGGGAGATGGCCCAAAACTTGTGAGAGAACTTTTCAGAGTTGCCGATGATCTTTCTCCTTCTATTGTATTCATTGATGAAATCGATGCAGTTGGTACAAAAAGGTATGATGCTCACTCAGGTGGAGAACGTGAGATTCAAAGGACCATGTTAGAGTTGCTGAACCAGTTAGATGGTTTTGATTCTAGAGGAGATGTAAAAGTGATTCTGGCAACCAACAGAATTGAAAGTCTTGATCCAGCTTTGCTACGGCCTGGTCGAATTGACAGGAAGATAGAATTTCCTCTTCCTGATATCAAAACAAGGAGACGCATCTTTCAGATACACACATCGAGGATGACATTAGCTGATGATGTCAACTTGGAAGAATTTGTTATGACTAAAGATGAATTCTCTGGAGCTGATATAAAGGCAATATGTACTGAAGCTGGTTTACTTGCTCTACGAGAACGCCGAATGAAGGTGACTCATGCCGACTTTAAGAAGGCCAAGGATAAAGTGATGTTTAAGAAGAAAGAAGGGGTGCCTGAAGGGCTGTATATGTGA 1332 0.4857 MGQGTPGGMNRQGDRKPDGGDKKEKKFEPAAPPARVGRKQRKQKGPEAAARLPTVTPVTKCKLRLLKLERIKDYLLMEEEFVANQERLKPQEEKAEEDRSKVDDLRGSPMSVGNLEELIDENHAIVSSSVGPEYYVGILSFVDKDQLEPGCAILMHNKVLSVVGLLQDEVDPMVSVMKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHADFKKAKDKVMFKKKEGVPEGLYM* 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g0373 443 MobiDBLite consensus disorder prediction 87 105 - -
Gso10g0373 443 Pfam ATPase family associated with various cellular activities (AAA) 225 358 IPR003959 GO:0005524|GO:0016887
Gso10g0373 443 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 186 436 IPR027417 -
Gso10g0373 443 MobiDBLite consensus disorder prediction 1 52 - -
Gso10g0373 443 MobiDBLite consensus disorder prediction 87 107 - -
Gso10g0373 443 TIGRFAM 26Sp45: 26S proteasome subunit P45 family 78 430 IPR005937 GO:0005737|GO:0030163|GO:0036402
Gso10g0373 443 MobiDBLite consensus disorder prediction 14 32 - -
Gso10g0373 443 Pfam Proteasomal ATPase OB C-terminal domain 112 165 IPR032501 -
Gso10g0373 443 CDD AAA 191 358 - -
Gso10g0373 443 PANTHER 26S PROTEASOME REGULATORY SUBUNIT 16 443 - -
Gso10g0373 443 Gene3D - 110 177 IPR012340 -
Gso10g0373 443 Gene3D - 363 437 - -
Gso10g0373 443 Pfam AAA+ lid domain 380 424 IPR041569 -
Gso10g0373 443 SMART AAA_5 221 360 IPR003593 -
Gso10g0373 443 ProSitePatterns AAA-protein family signature. 328 346 IPR003960 GO:0005524|GO:0016887
Gso10g0373 443 Gene3D - 178 358 IPR027417 -
Gso10g0373 443 PANTHER BNAA08G13550D PROTEIN 16 443 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g0373 Gso-Chr10 3965236 3969533 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g0373 186 428 Miscellaneous Gene Families AT3G47060 44.355 3.40e-55 194
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g0373 K03062 - gmx:100783293 862.448
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1427 19 43196364 43201540 Gso10g0373 10 3965236 3969533 PCT
Gso3g1436 3 40391958 40396837 Gso10g0373 10 3965236 3969533 PCT
Gso10g0373 10 3965236 3969533 Gso19g1427 19 43196364 43201540 PCT
Gso10g0373 10 3965236 3969533 Gso3g1436 3 40391958 40396837 PCT