Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma20g01998 ATGTCTCGAATCTTCTCCGCATGGAACAAGAAGAAGCTGCACCTTCATCTCAACTTAATCCCCACTATTTTTTCTTCTTCCCACACTCACTTCGACGCTCTCGCTGCCGCCAATAGTGGGCTTCTCCGGCCCAGTTTGAGGCTCTACAGTAGTAGTAGTAGCAGCAGCAATGGGGAGCCACCAGAGGATTGGCCTCACGATCACTACGCTGCTACGCAAACTCCTATTAGTGTTAATTTCATTCGGGCCTCTGGGCCCAGGGACGGGTGGGTCGGAGGGTCCAATTTGGGTAGGGATTTTCCTACTCCGAAGGAAATCTGCAAGGGACTCGACAAGTTTGTTATTGGCCAGCACAGGGCCAAGAAGGTGCTCTCTGTAGCTGTTTATAACCACTATCAAAGAATATACCAGGGGTCAGAGGCAGATGAAGGACTCTCTCAAGGATTGGATGATGGGGATGATGTGGAGCTGGAAAAGAGTAATGTTCTCTTGATGGGTCCAACCGGTTCAGGGAAGACGTTACTTGCGAAAACACTGGCTCGTTTTGTGAATGTTCCCTTTGTCATTGCTGATGCTACTACCCTAACACAGGCTGGTTATGTTGGGGAAGATGTCGAATCAATATTGTATAAACTACTTGCGGCAGCAGAGTTCAATGTTCAAGCTGCTCAACAAGGGATTGTTTACATTGATGAAGTGGACAAGATAACTAAGAAGGCTGAGAGCTTGAATATTAGCCGGGATGTTTCTGGTGAGGGTGTTCAGCAGGCATTATTAAAAATGCTGGAAGGAACTATGGTAAACGTTCCTGAGAGAGGAGCAAGGAAGCATCCACGGGGTGATAACATACAGATTGACACAAAGAATATTCTTTTTATATGTGGTGGAGCATTTATTGATCTTGAGAAAACCATTTCAGAGAGACGACAAGATTCTTCAATTGGTTTTGGATCACCAGTCCGTTCCAATATGAGAACTGGTGGAGTTACAAATGCTGCAGTCACATCATCTTTACTTGAGTCGGTGGAAAGTGCTGATCTTATTGCATATGGTCTCATACCCGAATTTATAGGACGATTTCCAATCTTAATTAGCTTGTCAGCTCTAACCGAAGACCAACTTATGCAGGTCCTCACAGAACCAAAAAATGCTCTTGCTAAGCAGTACAAGAAATTATTTAACATGAATAATGTAAAGCTACACTTCACAGAGAAAGCTCTGAGATTGATTGCAAAGAAAGCAATGGCCAAAAATACTGGTGCCAGGGGTTTAAGAGCACTACTGGAAAGCATTTTAACTGAAGCCATGTTTGAGATTCCAGATGTTAAAGCAGGAAATGAACTCATTGGTGCAGTTGTTGTTGATGAGGAGTCAGTAGGATCAGTAAATGCCCCTGGTTGTGGAGGAAAAATTCTTTGTGGAGATGGTGCTTTGGAACTGTACCTAGCTAAGATGGAGGGTTCAGTGGCTAACGGTGCCGTAGCTGAGCCAGACTTACAAGAAGGGGAATCAGAGATTTCATCAAGAGCCGTGAGCATGTAA 1542 0.4455 MSRIFSAWNKKKLHLHLNLIPTIFSSSHTHFDALAAANSGLLRPSLRLYSSSSSSSNGEPPEDWPHDHYAATQTPISVNFIRASGPRDGWVGGSNLGRDFPTPKEICKGLDKFVIGQHRAKKVLSVAVYNHYQRIYQGSEADEGLSQGLDDGDDVELEKSNVLLMGPTGSGKTLLAKTLARFVNVPFVIADATTLTQAGYVGEDVESILYKLLAAAEFNVQAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTMVNVPERGARKHPRGDNIQIDTKNILFICGGAFIDLEKTISERRQDSSIGFGSPVRSNMRTGGVTNAAVTSSLLESVESADLIAYGLIPEFIGRFPILISLSALTEDQLMQVLTEPKNALAKQYKKLFNMNNVKLHFTEKALRLIAKKAMAKNTGARGLRALLESILTEAMFEIPDVKAGNELIGAVVVDEESVGSVNAPGCGGKILCGDGALELYLAKMEGSVANGAVAEPDLQEGESEISSRAVSM 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma20g01998 513 CDD AAA 159 276 - -
Gma20g01998 513 SMART AAA_5 158 316 IPR003593 -
Gma20g01998 513 Gene3D - 95 367 IPR027417 -
Gma20g01998 513 PANTHER ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPX-LIKE, MITOCHONDRIAL-RELATED 84 490 - -
Gma20g01998 513 Pfam C-terminal, D2-small domain, of ClpB protein 369 438 IPR019489 -
Gma20g01998 513 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 99 451 IPR027417 -
Gma20g01998 513 Pfam AAA domain (Cdc48 subfamily) 158 362 IPR003959 GO:0005524|GO:0016887
Gma20g01998 513 SMART ClpB_D2_small_2 369 459 IPR019489 -
Gma20g01998 513 TIGRFAM clpX: ATP-dependent Clp protease, ATP-binding subunit ClpX 98 460 IPR004487 GO:0005524|GO:0006457|GO:0051082|GO:0140662
Gma20g01998 513 PANTHER OS01G0886600 PROTEIN 84 490 - -
Gma20g01998 513 Gene3D - 368 468 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma20g01998 Gma-Chr20 47247269 47253663 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma20g01998 162 261 Miscellaneous Gene Families AT3G02450 36.634 1.71e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma20g01998 K03544 - gmx:100818418 961.059
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma20g01998 20 47247269 47253663 Gma20g01998 20 47247269 47253663 ECH