Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma20g01995 ATGTTCTACTTCCTCAAAAGATTGTGCCTTCTATGCTTCCTCTTGTTATCCTTTGCTGTTTCACTGTTTTCATGTGCTTCACTCAGAGACTTGGCTTCTTGCTTGGATAATCACAATATCAAAAACTTTACCACGTTCCCTTACAAAGAACATGATCATTCCTCTGCCTATAGTTACTTCAAAATTCTCAATTTTTCCATCCAAAACCTTCGGTTTGCAGAACCCGTGATTCCTAAGCCAATAGCCATTGTACTGCCAGAGAGTTTGGAGCAGCTGCAGAAAAGTGTAGCATGCTGTAGAGAAGGCTCCATGGAAATAAGAGTAAGATGTGGTGGACACAGCTATGAAGGGACTTCATATGTTGCTGATGATGGCACTCCTTTTGTCATCATTGATATGATGAATTTGAACCATGTTTGGGTGGACATGGAGACAGAAACAGCATGGGTTGAAGGTGGTGCAACATTGGGAGAGACTTACTATGCAATCTCTCAGGAAAGCAATGAGCATGGATTCTCAGGTGGGTCATGTCCAACTGTTGGAGTTGGAGGGCACATTGGTGGTGGTGGATTTGGTTTGTTGTCTAGAAAGTATGGTCTTGCGGCAGATAACATGGTGGATGCCCTTCTTGTCGATGCTAACGGAAAATTGTTCGACCGCGAAACCATGGGAGAAGATGTGTTTTGGGCCATTAGAGGAGGAGGAGGTGGTCTTTGGGGGATCATTTATGCCTGGAAAATCCAGGTGTTGAAAGTGCCTCAAGTTGTAACTAGTTTCACTGTATCAAGAACTGGCACAAAAAGTCATGTTGCCAATCTAGTGCACAAATGGCAATATGTGGCACCAAACTTGGAAGATGACTTCTACTTGTCATGCTTGGTTGGTGCTGGTCTGCCCCAAGCTAAAACCACAGGGTTATCAACAACATTTAATGGCTTCTATCTCGGTCCTAGGGCCAGTGCCACATCCATCCTAAACCAGGCTTTTCCTGAGTTGAGTATTGCAGAAGAAGAATGCATAGAAATGAGTTGGATTCAGTCAATTGTTTTCTTCTCTGGCCTAAGCGATGGAGCCTCGGTCTCTGACTTGAAGAACAGGTATCTGCAAGAAAAAGAATATTTCAAGGCCAAATCAGATTATGTAAAGAAAAATGTTCCTCTTGTGGGCATAGAAACTGCACTAGACATCCTAGAAAAGGAGCCTAAGGGATATGTTGTTCTGGACCCTTATGGTGGCATGATGCATAATATAAGCAGTGAGTCCATTGCTTTTCCCCACAGAAGAGGAAACCTGTTTACAATTCAGTACCTGATCTATTGGAAAGAAGCTGACAATGACAAAAGCAGCGATTATGTTGATTGGATAAGAGGGTTCTATGCTGCTATGACTCCCTTTGTTTCATGGGGTCCAAGGGCTGCATATATTAATTACATGGACTTTGACCTTGGAGTGATGGAGGGGATTGGTAATGGTGCTAATATGAAAGATGCTGTGGAACATGCAAGGGTTTGGGGTGAAAAGTACTTCTTGAGTAACTATGACAGATTGGTGAGGGCCAAAACTCTGATTGATCCTAACAATGTTTTCACCAATGATCAGGGCATTCCTCCCATATCTTTGACCAGTCCCTATGCCAAAGCGCAGAGCAAATAA 1653 0.4313 MFYFLKRLCLLCFLLLSFAVSLFSCASLRDLASCLDNHNIKNFTTFPYKEHDHSSAYSYFKILNFSIQNLRFAEPVIPKPIAIVLPESLEQLQKSVACCREGSMEIRVRCGGHSYEGTSYVADDGTPFVIIDMMNLNHVWVDMETETAWVEGGATLGETYYAISQESNEHGFSGGSCPTVGVGGHIGGGGFGLLSRKYGLAADNMVDALLVDANGKLFDRETMGEDVFWAIRGGGGGLWGIIYAWKIQVLKVPQVVTSFTVSRTGTKSHVANLVHKWQYVAPNLEDDFYLSCLVGAGLPQAKTTGLSTTFNGFYLGPRASATSILNQAFPELSIAEEECIEMSWIQSIVFFSGLSDGASVSDLKNRYLQEKEYFKAKSDYVKKNVPLVGIETALDILEKEPKGYVVLDPYGGMMHNISSESIAFPHRRGNLFTIQYLIYWKEADNDKSSDYVDWIRGFYAAMTPFVSWGPRAAYINYMDFDLGVMEGIGNGANMKDAVEHARVWGEKYFLSNYDRLVRAKTLIDPNNVFTNDQGIPPISLTSPYAKAQSK 550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma20g01995 550 Gene3D - 255 469 - -
Gma20g01995 550 Pfam FAD binding domain 80 218 IPR006094 GO:0050660
Gma20g01995 550 Gene3D - 141 537 IPR016169 -
Gma20g01995 550 Gene3D - 30 136 IPR016167 -
Gma20g01995 550 PANTHER OS08G0158400 PROTEIN 23 540 - -
Gma20g01995 550 SUPERFAMILY FAD-binding/transporter-associated domain-like 68 253 IPR036318 GO:0050660
Gma20g01995 550 ProSiteProfiles PCMH-type FAD-binding domain profile. 76 252 IPR016166 GO:0071949
Gma20g01995 550 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 25 - -
Gma20g01995 550 Pfam Berberine and berberine like 473 536 IPR012951 GO:0016491|GO:0050660
Gma20g01995 550 PANTHER FAD-BINDING BERBERINE FAMILY PROTEIN 23 540 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma20g01995 Gma-Chr20 47238092 47239744 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma20g01995 29 536 Miscellaneous Gene Families AT1G30760 41.506 1.98e-129 387
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma20g01995 - - gmx:100790761 1065.45
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma20g01995 20 47238092 47239744 Gma20g01995 20 47238092 47239744 ECH