Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma20g01486 ATGAATTCGGTAACCCTTTTAGGTTCAAAGAGGGTCCATAAATGTTCCCATTCTTTGATTATTTTGCGGAGATTATGTAACCATCCGTTTGATGGTGATGGGTTCGAATTTATTGAGGAACCTTTGAAAAAACTGGGTTCAGATTATGATTCCACCGTGGATGAAAGGCTCCATGTGAACGAGGATTGGGGTTTTAAGCAAAAGCAATTCTCACTTAGAAAAGGATTCTTAGAAACTGTTAAGTTAGATGCTAAGAGGGTCCTTGAGGTTCTCCGGCAAGATGGTCCCGGTCTGGATGCGAGGTTGGTTTTAGGTGAGTTGCATGTAAGGCCATCAGGGCTTCTTGTGAGGGAGGTTCTCTTTGGAATTTTGAAGAACATAAATTGTCAGAATAAGACCAGGTGTGCAAAGCTGGCATATAAGTTTTTTGTGTGGTGCAGTCAGCAAGAGGGTTACCAGCACACTGTGAATGCGTATCACCTAGTTATGAGCATATATGCTGAGTGCGAGGAGTTTAAGGCATTGTGGAGGTTGGTTGATGAGATGATTGAGAAAGGGCTTCCGGCTACTGCTCGTACTTTCAATATATTGATCCGTACTTGTGGTGAGGCAGGATTGGCTAAGAATTTGGTGGAGAGGTTCATAAAATCAAAGACATTTAACTTCAGGCCTTTTAAGCACTCCTACAATGCAATCCTGCATGGTCTTCTTGTTTTAAACCAGTACAAGTTGATTGAATGGGTTTATCAACAGATGTTGCTTGATGGATTTCCTTCAGATATTTTAACTTATAATATTGTCATGTATGCCAAGTACAGACTAGGAAAGTTGGATCAATTTCACAGACTGCTTGATGAGATGGGTAGAAATGGATTTTCTCCAGATTTTCACACTTTCAATATTCTTCTTCATGTTCTTGGCAAGGGGGACAAACCGCTTGCAGCTCTCAATCTTTTAAATCACATGAGAGAAATGGGTATAGAACCAACGGTGCTTCATTTCACTACATTGATAGATGGACTCAGCAGAGCTGGGAATCTGGATGCTTGCAAATACTTTTTTGATGAAATGATAAAGAATGAATGCAGGCCAGATGTGGTGGCTTACACTGTAATGATAACAGGATATGTAGTGGCTGGTGAGATTGAGAAAGCACTGGAAATGTATCAAGATATGATTTCTAGAGAACAAGTTCCAAATGTTTTTACATACAATTCAATAATTCGGGGATTATGTATGGCAGGAAAATTTGATGAAGCGTGCTCAATGCTCAAGGAAATGGAGACCAAAGGTTGTAGTCCAAATTCTGTTGTCTATAATACATTAGCGAGTTGTTTGAGGAATGCTGGAAAGACTGCCGATGCTCATGAAGTGATAAGACAGATGACGGAGAAAGTGAAGCATGCTGACATACATTCAAGATTCAAAGGACATAAAGCTTAG 1443 0.4012 MNSVTLLGSKRVHKCSHSLIILRRLCNHPFDGDGFEFIEEPLKKLGSDYDSTVDERLHVNEDWGFKQKQFSLRKGFLETVKLDAKRVLEVLRQDGPGLDARLVLGELHVRPSGLLVREVLFGILKNINCQNKTRCAKLAYKFFVWCSQQEGYQHTVNAYHLVMSIYAECEEFKALWRLVDEMIEKGLPATARTFNILIRTCGEAGLAKNLVERFIKSKTFNFRPFKHSYNAILHGLLVLNQYKLIEWVYQQMLLDGFPSDILTYNIVMYAKYRLGKLDQFHRLLDEMGRNGFSPDFHTFNILLHVLGKGDKPLAALNLLNHMREMGIEPTVLHFTTLIDGLSRAGNLDACKYFFDEMIKNECRPDVVAYTVMITGYVVAGEIEKALEMYQDMISREQVPNVFTYNSIIRGLCMAGKFDEACSMLKEMETKGCSPNSVVYNTLASCLRNAGKTADAHEVIRQMTEKVKHADIHSRFKGHKA 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma20g01486 480 Pfam PPR repeat family 260 306 IPR002885 -
Gma20g01486 480 Pfam PPR repeat family 155 201 IPR002885 -
Gma20g01486 480 Pfam PPR repeat family 364 412 IPR002885 -
Gma20g01486 480 Pfam PPR repeat 228 257 IPR002885 -
Gma20g01486 480 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 155 189 IPR002885 -
Gma20g01486 480 PANTHER OS10G0506000 PROTEIN 1 479 - -
Gma20g01486 480 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 330 364 IPR002885 -
Gma20g01486 480 Pfam PPR repeat 430 463 IPR002885 -
Gma20g01486 480 Pfam PPR repeat 325 357 IPR002885 -
Gma20g01486 480 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 400 434 IPR002885 -
Gma20g01486 480 Gene3D Tetratricopeptide repeat domain 324 394 IPR011990 GO:0005515
Gma20g01486 480 Gene3D Tetratricopeptide repeat domain 248 323 IPR011990 GO:0005515
Gma20g01486 480 Gene3D Tetratricopeptide repeat domain 395 468 IPR011990 GO:0005515
Gma20g01486 480 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 260 294 IPR002885 -
Gma20g01486 480 SUPERFAMILY TPR-like 365 467 IPR011990 GO:0005515
Gma20g01486 480 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 295 329 IPR002885 -
Gma20g01486 480 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 435 465 IPR002885 -
Gma20g01486 480 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 365 399 IPR002885 -
Gma20g01486 480 TIGRFAM PPR: pentatricopeptide repeat domain 297 331 IPR002885 -
Gma20g01486 480 TIGRFAM PPR: pentatricopeptide repeat domain 402 436 IPR002885 -
Gma20g01486 480 TIGRFAM PPR: pentatricopeptide repeat domain 437 465 IPR002885 -
Gma20g01486 480 TIGRFAM PPR: pentatricopeptide repeat domain 263 295 IPR002885 -
Gma20g01486 480 TIGRFAM PPR: pentatricopeptide repeat domain 334 366 IPR002885 -
Gma20g01486 480 TIGRFAM PPR: pentatricopeptide repeat domain 367 401 IPR002885 -
Gma20g01486 480 Gene3D Tetratricopeptide repeat domain 115 238 IPR011990 GO:0005515
Gma20g01486 480 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATED 1 479 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma20g01486 Gma-Chr20 41959098 41960540 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma20g01486 181 473 Miscellaneous Gene Families AT4G11690 28.328 8.65e-38 143
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma20g01486 - - gmx:100792512 979.933
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g02235 10 49935911 49937353 Gma20g01486 20 41959098 41960540 GST