Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma20g01443 ATGGATAAGGCTGGGCAATCTCTGAAATGGGTTCTCTTGGATTTGATTCACAAATGCAACGACTTAAGATCCTTCAAGCAAATCCATGCGCATCTATTGACTTCTTCCCTTATTGCCAATGACTTGGTGACCAAAGCTGCAAACTTTTTGGGAAAACATGTCACTGATGTTCATTACCCTTGCAAAATCCTGAAGCAATTTGATTGGATCTTGAGCTCTTTCCCTTGCAATATGCTGATTTCAGGGTATGCCTCTGGCCAGTTACCCTGGCTTGCAATCCTGATTTATAGATGGACTGCTAGGAATGGGTTTGTGCCTGATGTGTACACTGTCCCAGCTGTTTTGAAATCTTGTGGTAAGTTTTCTGGGATTGGAGAGGCTAGACAGTTTCATTCAGTGGCTGTTAAGACTGGCTTGTGGTGTGACATTTATGTGCAAAACAATCTTGTCCATGTTTATAGCATTTGTGGAGACACTGTTGGTGCTGGCAAGGTGTTTGATGACATGCTTGTTAGAGATGTGGTCTCTTGGACTGGTTTGATATCTGGGTATGTGAAGGCTGGGTTGTTTAATGATGCCATTTGGTTGTTTTTTAGAATGGATGTGGAGCCTAATGTGGCAACCGTTGTTAGCATACTTGGGGCTTGTGGGAAATTGGGTCGTTCAAGTCTGGGGAAGGGGATTCATGGGTTGGTTCTCAAATGTCTGTATGGGGAGGACTTGGTGGTGTGCAATGCTGTGTTGGATATGTATATGAAGTGTGAGTCTGTGACTGATGCAAGGAAAATGTTTGATGAGATACCTGTGAAAAATATTATTTCTTGGACTAGTATGATAGGCGGGTTAGTGCAGTGCCAGTGTCCCAGGGAATCACTTGACTTGTTCAATCAAATGCAGTGCTCAGGTTTTGAGCCTGATGGGGTTATACTGACTAGTGTGCTTTCTGCTTGTGCCAGTCTTGGGCTTCTTGATGATGGCAGATGGGTCCATGAATACATTGATCGTCGCCGTATCAAGTAG 1020 0.4382 MDKAGQSLKWVLLDLIHKCNDLRSFKQIHAHLLTSSLIANDLVTKAANFLGKHVTDVHYPCKILKQFDWILSSFPCNMLISGYASGQLPWLAILIYRWTARNGFVPDVYTVPAVLKSCGKFSGIGEARQFHSVAVKTGLWCDIYVQNNLVHVYSICGDTVGAGKVFDDMLVRDVVSWTGLISGYVKAGLFNDAIWLFFRMDVEPNVATVVSILGACGKLGRSSLGKGIHGLVLKCLYGEDLVVCNAVLDMYMKCESVTDARKMFDEIPVKNIISWTSMIGGLVQCQCPRESLDLFNQMQCSGFEPDGVILTSVLSACASLGLLDDGRWVHEYIDRRRIK 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma20g01443 339 Gene3D Tetratricopeptide repeat domain 233 332 IPR011990 GO:0005515
Gma20g01443 339 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 256 339 - -
Gma20g01443 339 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 191 256 - -
Gma20g01443 339 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 6 192 - -
Gma20g01443 339 Gene3D Tetratricopeptide repeat domain 74 232 IPR011990 GO:0005515
Gma20g01443 339 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 173 203 IPR002885 -
Gma20g01443 339 TIGRFAM PPR: pentatricopeptide repeat domain 273 306 IPR002885 -
Gma20g01443 339 TIGRFAM PPR: pentatricopeptide repeat domain 175 200 IPR002885 -
Gma20g01443 339 Pfam PPR repeat family 270 318 IPR002885 -
Gma20g01443 339 Pfam PPR repeat 147 173 IPR002885 -
Gma20g01443 339 Pfam PPR repeat 175 200 IPR002885 -
Gma20g01443 339 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 271 305 IPR002885 -
Gma20g01443 339 PANTHER OS04G0488200 PROTEIN 256 339 - -
Gma20g01443 339 PANTHER OS04G0488200 PROTEIN 191 256 - -
Gma20g01443 339 PANTHER OS04G0488200 PROTEIN 6 192 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma20g01443 Gma-Chr20 41589581 41590600 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma20g01443 100 335 Glycoside Hydrolase AT3G49170 33.061 4.67e-30 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma20g01443 - - gmx:100815155 622.854
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g02272 10 50312021 50313808 Gma20g01443 20 41589581 41590600 GST