Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma20g01425 ATGGAAGCCATTTCCAACCAAAACCATGTTCCTCTCTTCCATGCAATCCCCCCTGACCAATTCACTCTCTTGTCAAAGGTCCTTTCAAAACTCTCAATTCTTCTTTGGCCTTGTACCTTCTTAATTGAAGCATTCTTACTTGTGCAAAACTGGGACCTACTGTTCCATTTTGTGCTACCATGTTTCCTCCTTCTTTGTTTCCTGGTGAAGCACTTCCTCTCAAAGCCCTCTCCCATTTACCTTGTGGATTTCTCATGTCTTAAACCTCCAAGCCACTGCAGGGTGCCTTTCACTACATTTCTTGAAAATGCTTCCATGTTGGAGGTTTTTGACAGTGAAAGCATAGCTTTCATGGCCAAAGTCCTCCATTCCTCGGGACAAAGTGAAGAGGCATGCCTCCCCCCTTCCTTGCACTACATTCCTCCAAACACTCACCACACAGAATCCATCAAAGAGGTGCAAATGGTTCTTTTCCCCATCGTGGAAGATCTTCTAGCAAAAACCAACCTTTCACCCCTTGATATAGACATACTTATCATAAACTGCAGTGGCTTTTGCTCCTCACCTTCTCTAACCTCCATTGTTATTAACAAATACTCTATGAGAAATGACATTAAGAGCTATAATATCTCTGGCATGGGGTGCAGTGCAAGTGCCCTTTGCATTGATTTGGCTCAGAATCTTCTGAGTGTTCACAAGAACTCTAATGCCATTGTCCTCAGCACAGAGATTTTGTCAACAGGTTGGTATTCAGGCAATGAAAAGTCCAAGTTGCTGATTAATTGCCTCTTTCGGATGGGAAGTGCAGCAATCCTTCTCTCAAACAAGAAAGAAGCAAAGAAAACTGCAAAGTACAGGTTGGTCAGGACACTTAGAACCCAGAGAGCCTTTGATGACAAATCTTATTTTTCTGCCATAAGGGAAGAAGATTCTGATGGAAAACTTGGGGTGACACTGAAGAGGGACTTGCTTCAGGTGGCTGGTGAAACTCTCCGTACAAACATCTCCATTTTGGGGTCTGAAATCTTGCATCTTTCAGAGAAGTTTTCGTATGGAGTTTCTGTGATCAAGAAGAGGTTCATCAAGTCTGAGGGAATTTACGTGCCAAATTTCAAGACAGTGATACAGCACTTCTGCTTGCCATGTTCTGGGAGGCCAGTGATAAGAGAGATAGGGAAAGGGTTGAAGCTCTCAGAGAGAGACATTGAACCTGCTTTGATGACACTGCACAGGTTTGGGAACCAGTCTTCTTCCTCGCTGTGGTATGAACTAGCTTACTTGGAAGCCAAGGAAAGAGTACACAAGGGAGACAAGGTTTGGCAGCTTGGAATGGGAAGTGGACCCAAATGCAACAGTGTTGTTCTGAAGTGTATTAGGCCTATAGTTGGAGAGTACGAGAAGGGACCATGGGCTGATTGTATCAATCAGTACCCAATATTAGCCTTGGACTAG 1452 0.4394 MEAISNQNHVPLFHAIPPDQFTLLSKVLSKLSILLWPCTFLIEAFLLVQNWDLLFHFVLPCFLLLCFLVKHFLSKPSPIYLVDFSCLKPPSHCRVPFTTFLENASMLEVFDSESIAFMAKVLHSSGQSEEACLPPSLHYIPPNTHHTESIKEVQMVLFPIVEDLLAKTNLSPLDIDILIINCSGFCSSPSLTSIVINKYSMRNDIKSYNISGMGCSASALCIDLAQNLLSVHKNSNAIVLSTEILSTGWYSGNEKSKLLINCLFRMGSAAILLSNKKEAKKTAKYRLVRTLRTQRAFDDKSYFSAIREEDSDGKLGVTLKRDLLQVAGETLRTNISILGSEILHLSEKFSYGVSVIKKRFIKSEGIYVPNFKTVIQHFCLPCSGRPVIREIGKGLKLSERDIEPALMTLHRFGNQSSSSLWYELAYLEAKERVHKGDKVWQLGMGSGPKCNSVVLKCIRPIVGEYEKGPWADCINQYPILALD 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma20g01425 483 PIRSF Very_long_ch_3-ktacl-CoA_syn 9 482 IPR012392 GO:0006633|GO:0016020|GO:0016747
Gma20g01425 483 CDD CHS_like 80 455 - -
Gma20g01425 483 Pfam 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal 375 456 IPR013747 -
Gma20g01425 483 PANTHER 3-KETOACYL-COA SYNTHASE 21 481 - -
Gma20g01425 483 Pfam FAE1/Type III polyketide synthase-like protein 74 359 IPR013601 GO:0006633|GO:0016020|GO:0016747
Gma20g01425 483 SUPERFAMILY Thiolase-like 264 459 IPR016039 GO:0016746
Gma20g01425 483 Gene3D - 104 457 IPR016039 GO:0016746
Gma20g01425 483 PANTHER 3-KETOACYL-COA SYNTHASE 21 481 IPR012392 GO:0006633|GO:0016020|GO:0016747
Gma20g01425 483 SUPERFAMILY Thiolase-like 68 279 IPR016039 GO:0016746
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma20g01425 Gma-Chr20 41371313 41372764 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma20g01425 54 480 Miscellaneous Gene Families AT1G25450 48.832 1.92e-155 449
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma20g01425 K15397 - gmx:100813265 952.199
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g02288 10 50485115 50486560 Gma20g01425 20 41371313 41372764 GST