Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma19g02169 ATGTCCCGTTTCCTAGGAAAATACCTTAGGACTAAGGGGCCCTTGTTTCTGCACAAAATTTTGGGAATCTCGTCCGAGTCGCATAACATCCTGGTTTTATCAAGGTATCGCCGCCACTTTTCACATTCCCTTCCCCACAATACTTCAAATTTGGTTCCAAGTACCGGGTCTCTCCAAATTCGGTTCTTTGCCTCTGAGGCCGCTGCTGCCACCACTGAACCCTCAACCTCCGATGGGCTCACGGTCCAAGGAATTCTGGCCAATAATTGGAACATTCTCGACGAAAACGACGGCGATTGGAAGAGTCATGCCACCGCCATAGCTCAATCTATTCACTTGATCAAACGCCGTTTACATTGGGAAAAATTGAAGGTGAGGTTGGATATGTTATCATTCCAGCTGAGTAAGGAAGACCTTTGGGATGATCCGGTGCGTGCAGGTAAAATAAGCCGAGAGCACGGTTCGCTCTTGGGAAAAATGAAAGAGGTAAATGCATTTGAACAAGAGTTGCTTGAGCACATTGACATGATAAAGCTTGCGCGCGAAGAGAATGATGCGGATTTGGAATCGGAATCACTGAAAGCGTTGCTTAACATGAGAAGAAATGCAAAAGAGAAAGAGCTAGAGGCATTGCTTTCTGGGGAGCAAGATTCTTGTTCGTGCTACATTGAGGTTCAAGCTGGTGCTGGGGGTACTGAGAGCATGGACTGGGCTGCGATGGTCATGCAGATGTATAAGTCATGGGCACAGCGACGTGGATATAAAGTAACTGTAGTGGATGAAATGCCTGGTGAGATTGCAGGAATCAAGCGAGCTACCATCAAAGTAGATGGTGAGTTTGCATTTGGATATGCCAAAGCAGAAATAGGAGTGCACAGGCTGGTGCGCATATCACCTTTTGACAGTAATAAGCGCCGGCATACTTCATTTGCCGCTGTGGCAGTGATTCCAATCCTTGGTGATGGATCTACCCATGTACAAATTAATGAATCTGATCTTCGAATTGAACGATTTCGTGCTGGTGGTGCTGGTGGCCAACATGTTAACACAACTGAGAGTGCTGTAAGAATAGTTCATATTCCTACAGGAGTTACTGCAACTTGTCAGAATGAAAGATCGCAGCATCAGAATAAGGCTTCAGCAATGGCTGTACTTCAGTCAAGATTAGACCAACTGGAGATGGCACGCCAGGCACAGTTCAATGCACAACATACACAATCTCTCACCGACATAACATGGGGCAGTCAGATTCGTAGTTATGTTCTCCATCCTTACCGTATGGTGAAAGATCTTAGAACTAACTATGAGGTTTCAGATCCTGACTCTGTCCTTGAGGGAGATCTAGACACGTCTGAGAAGAAGAGGGTTCAGTTTCTAGCCTTTGTCGCTGCCATCATTGCTCTTAGCATCACAGCTGAAAAATGCAGGCAGCTAGTCGGCGAGAAGGCGTCATCCCAGAGTGGAAAGTTTACATTCCTAAATTGCTTTGACATGACTTCTGGAACATTAGCATGTAGTGTGAAGGAAAGTGTGAAGTTATACTGCTACAATATTAGAGCTGCTCATGTTGAAGGAGCAAGGCATGATGCAATGAAGTCTGCCCTTGTTGATGCTTTGAAGCAGGGAATGTCACAGAGTGCTTCGGCAAAATATGCTAAGAAAGAAGGTGACAAGGCAGCAAAATTGGCTTCTCGTAAAGCCAGGCGCATTATAGGTCCCATCCTCTCTTCAGGGTGGGATTTTTTTGAAGCTGTGTACTATGGTGGTACTCTCACTGAAGGGTTCCTCAGGGGAAGTGGCACTTTGTTTGGTACTTATGCTGGAGGCTTCCTTGGGGATCAAAGGCTTGGGAGATTTGGTTACCTTGTTGGAAGTCATATGGGTAGTTGGATTGGAGGTAGAATGGGGCTAATGCTATATGATGTGGCTAATGGAGTCCATTTCTTGTTGCATTCTGTTCAATCACTTGGAAGTGAAGTTCAAAAAACTTCAGCTGACTATCAAGAAAATTAA 2013 0.4536 MSRFLGKYLRTKGPLFLHKILGISSESHNILVLSRYRRHFSHSLPHNTSNLVPSTGSLQIRFFASEAAAATTEPSTSDGLTVQGILANNWNILDENDGDWKSHATAIAQSIHLIKRRLHWEKLKVRLDMLSFQLSKEDLWDDPVRAGKISREHGSLLGKMKEVNAFEQELLEHIDMIKLAREENDADLESESLKALLNMRRNAKEKELEALLSGEQDSCSCYIEVQAGAGGTESMDWAAMVMQMYKSWAQRRGYKVTVVDEMPGEIAGIKRATIKVDGEFAFGYAKAEIGVHRLVRISPFDSNKRRHTSFAAVAVIPILGDGSTHVQINESDLRIERFRAGGAGGQHVNTTESAVRIVHIPTGVTATCQNERSQHQNKASAMAVLQSRLDQLEMARQAQFNAQHTQSLTDITWGSQIRSYVLHPYRMVKDLRTNYEVSDPDSVLEGDLDTSEKKRVQFLAFVAAIIALSITAEKCRQLVGEKASSQSGKFTFLNCFDMTSGTLACSVKESVKLYCYNIRAAHVEGARHDAMKSALVDALKQGMSQSASAKYAKKEGDKAAKLASRKARRIIGPILSSGWDFFEAVYYGGTLTEGFLRGSGTLFGTYAGGFLGDQRLGRFGYLVGSHMGSWIGGRMGLMLYDVANGVHFLLHSVQSLGSEVQKTSADYQEN 670
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma19g02169 670 Gene3D Release factor 99 209 - -
Gma19g02169 670 TIGRFAM prfB: peptide chain release factor 2 102 450 IPR004374 GO:0005737|GO:0006415|GO:0016149
Gma19g02169 670 Hamap Peptide chain release factor 2 [prfB]. 96 470 IPR004374 GO:0005737|GO:0006415|GO:0016149
Gma19g02169 670 ProSitePatterns Prokaryotic-type class I peptide chain release factors signature. 339 355 IPR000352 GO:0003747|GO:0006415
Gma19g02169 670 Coils Coil 163 183 - -
Gma19g02169 670 Pfam PCRF domain 125 313 IPR005139 GO:0006415
Gma19g02169 670 Gene3D - 223 450 - -
Gma19g02169 670 PANTHER PEPTIDE CHAIN RELEASE FACTOR 2 88 450 - -
Gma19g02169 670 Gene3D - 319 415 - -
Gma19g02169 670 PANTHER PEPTIDE CHAIN RELEASE FACTOR PRFB1, CHLOROPLASTIC-RELATED 88 450 - -
Gma19g02169 670 SUPERFAMILY Release factor 123 450 IPR045853 -
Gma19g02169 670 Pfam RF-1 domain 325 432 IPR000352 GO:0003747|GO:0006415
Gma19g02169 670 SMART PCRF_a_2 178 288 IPR005139 GO:0006415
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma19g02169 Gma-Chr19 50553078 50559207 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma19g02169 K02836 - gmx:100797427 875.159
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma19g02169 19 50553078 50559207 Gma19g02169 19 50553078 50559207 ECH
Gma19g02169 19 50553078 50559207 Gma03g02135 03 46851653 46852392 GST