Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma19g02158 ATGTTGCAGTGCATATTTCTTCTGTCAGATTCCGGAGAGGTAATGCTAGAGAAACAGCTTAGTGGGCACCGCGTAGATCGCTCCATATGTGCCTGGTTCTGGGACCAAGCCATTTCTCAACCTGATTCCTTCAAGCAACAGCCAGTTATTGCTTCTCCCACACATTATCTATTCCAAGTTTTTCGTGAGGGGATCACTTTTTTGGCCTGCACTCAAGTCGAAATGCCTCCATTGATGGCCATTGAGTTCCTTTGTAGGGTAGCTGATGTTCTCAATGATTATCTTGGGGGGTTGAATGAAGACTTGATCAAAGACAACTTTGTCATTGTATATGAGCTTCTGGATGAGATGATAGACAATGGCTTCCCGCTAACTACGGAACCTAATATCCTGCAAGAGATGATAGCTCCACCAAATATTGTTAGCAAAGTCTTGAGTGTTGTGACTGGAAGCAGCTCCAATGTGAGTGATACCCTTCCAGTTGCTACTGCATCTCTTGTTCCCTGGAGAACGGCAGACACAAAGTATGCCAACAATGAAGTTTATGTAGATCTTGTTGAAGAAATGGATGCAACAATAAACAGGGATGGAGTTCTGGTGAAATGTGAGATCAATGGTGAGGTTCAAGTGAATTCCCATATCACAGGTCTTCCTGATTTGACTCTTTCATTTGCAAATCCTTCAATCCTTGATGATGTGAGGTTCCATCCCTGTGTTAGATATCAGCCCTGGGAATCCAATCAAATTCTTTCCTTTGTGCCTCCTGATGGACAATTTAAGCTTATGAGTTACAGAATTAGAAAATTGAAGAACACCCCGATATATGTAAAGCCACAATTGACTTCAGATGGTGGAGCATGCCGTGTGAGTATATTGGTTGGCATAAGAAATGATCCTGGAAAGACAATTGATAACGTAACTCTGCAGTTTCAACTTCCTTCTTGCATCTTATCAGCTGATCTGACTTCGAATTATGGAATAGTAAACATCCTTGCTAACAAGACATGCTCTTGGTCAATTGGTCGGATCCCAAAGGATAAAGCCCCTTCAATGTCAGGAACATTGGTGCTGGAGACTGGATTGGATCGCCTTCATGTCTTTCCCACATTTCAAGTGGGTTTTAGGATTATGGGTGTTGCCCTCTCTGGTCTGCAAATAGATAAACTAGATCTGAAGACCGTACCTTACCGTTTTTATAAAGGTTTTCGAGCTCTTACTCGGGCAGGGGAATTTGAAGTCAGGTCATAA 1248 0.4255 MLQCIFLLSDSGEVMLEKQLSGHRVDRSICAWFWDQAISQPDSFKQQPVIASPTHYLFQVFREGITFLACTQVEMPPLMAIEFLCRVADVLNDYLGGLNEDLIKDNFVIVYELLDEMIDNGFPLTTEPNILQEMIAPPNIVSKVLSVVTGSSSNVSDTLPVATASLVPWRTADTKYANNEVYVDLVEEMDATINRDGVLVKCEINGEVQVNSHITGLPDLTLSFANPSILDDVRFHPCVRYQPWESNQILSFVPPDGQFKLMSYRIRKLKNTPIYVKPQLTSDGGACRVSILVGIRNDPGKTIDNVTLQFQLPSCILSADLTSNYGIVNILANKTCSWSIGRIPKDKAPSMSGTLVLETGLDRLHVFPTFQVGFRIMGVALSGLQIDKLDLKTVPYRFYKGFRALTRAGEFEVRS 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma19g02158 415 Gene3D Mu homology domain, subdomain B 167 410 - -
Gma19g02158 415 Pfam Adaptor complexes medium subunit family 167 414 IPR028565 -
Gma19g02158 415 PIRSF AP_complex_mu 1 415 IPR001392 GO:0006886|GO:0016192|GO:0030131
Gma19g02158 415 ProSiteProfiles Mu homology domain (MHD) profile. 178 414 IPR028565 -
Gma19g02158 415 CDD AP-3_Mu3_Cterm 167 414 - -
Gma19g02158 415 SUPERFAMILY Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor 167 414 IPR036168 -
Gma19g02158 415 ProSitePatterns Clathrin adaptor complexes medium chain signature 1. 167 187 IPR018240 GO:0006886|GO:0016192|GO:0030131
Gma19g02158 415 PRINTS Clathrin coat assembly protein signature 100 127 IPR001392 GO:0006886|GO:0016192|GO:0030131
Gma19g02158 415 PRINTS Clathrin coat assembly protein signature 230 257 IPR001392 GO:0006886|GO:0016192|GO:0030131
Gma19g02158 415 PRINTS Clathrin coat assembly protein signature 337 348 IPR001392 GO:0006886|GO:0016192|GO:0030131
Gma19g02158 415 PANTHER CARMINE, ISOFORM A 7 414 - -
Gma19g02158 415 Gene3D Mu homology domain, subdomain B 272 413 - -
Gma19g02158 415 Gene3D - 1 142 - -
Gma19g02158 415 PANTHER AP COMPLEX SUBUNIT MU 7 414 - -
Gma19g02158 415 CDD AP3_Mu_N 3 142 - -
Gma19g02158 415 SUPERFAMILY SNARE-like 1 142 IPR011012 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma19g02158 Gma-Chr19 50438357 50441529 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma19g02158 K12398 - gmx:100799191 833.558
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma19g02158 19 50438357 50441529 Gma19g02158 19 50438357 50441529 ECH
Gma19g02158 19 50438357 50441529 Gma03g02122 03 46748707 46751522 GST
Gma19g02158 19 50438357 50441529 Gma10g01435 10 41432128 41434800 PCT
Gma10g01435 10 41432128 41434800 Gma19g02158 19 50438357 50441529 PCT