Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma19g02074 ATGGGTACAGAGAGAAAGAGGAAGGTGAGCTTGTTTGATGTGGTAGACGATTCTGCGGCGAAGATGGCGAAATCCAATGGCGGCGCCGCTGCTAATAATCTCACCAATCATTGGACCGCAAGGCCTTACTCCCAAAGGTACTTCGAGATTTTGGAGAAGAGAAAGACCCTCCCCGTTTGGCACCAGAAAGAAGAGTTTTTGCAAGTTCTCAAAGATAACCAGACTTTGATTCTCGTCGGTGAAACTGGTAGTGGCAAAACCACTCAGATTCCTCAGTTTGTTTTGGATGCTGTCGAATTAGAGACACCGGATAAACGTAGGAAGATGATGGTAGCCTGCACTCAGCCTCGGAGAGTAGCTGCGATGTCTGTTTCGCGTCGTGTGGCTGAAGAGATGGATGTAACTATTGGGGAAGAGGTTGGTTACAGTATCAGATTTGAAGACTGCAGTAGTGCGAAGACGGTTTTGAAGTATCTTACGGATGGTATGCTCTTAAGAGAAGCGATGACAGATCCGCTTTTGGAACGGTACAAGGTTATTATTCTTGATGAGGCACATGAGAGGACTTTGGCCACGGATGTGCTATTTGGCCTTCTGAAGGAAGTGCTTAAAAATCGACCTGACATGAAGTTGGTTGTTATGAGTGCGACTCTTGAAGCTGAAAAGTTTCAGGGTTATTTTTTCGGTGCCCCTCTCATGAAAGTTCCTGGAAGGCTACATCCTGTTGAAATTTTCTATACGCAGGAACCTGAAAGGGATTACTTGGAGGCCGGCATTAGGACAGTGGTACAGATACACATGTGTGAGCCTCCAGGAGATATACTTGTATTTCTGACTGGAGAGGAAGAGATAGAAGATGCTTGCCGCAAAATAACAAAAGAAATTTCTAATCTGGGAGATCAGGTGGGGCCTGTCAAAGTTGTACCCCTGTATTCTACTCTTCCTCCTGCTATGCAGCAGAAGATTTTTGAGCCAGCTCCACCTCCACTGAAGGAGGGTGGACCTCCTGGAAGGAAGATTGTGGTATCAACTAACATAGCCGAAACTTCCTTAACAATTGATGGTATTGTTTATGTCATTGACCCTGGTTTTGCTAAGCAGAAGGTTTATAACCCACGAATTCGTGTGGAGTCTTTATTAGTGTCACCAATATCGAAAGCTAGTGCACATCAGAGATCAGGACGTGCTGGAAGAACTCAACCAGGGAAATGCTTTAGACTTTACACTGAGAAAAGTTTCAATAATGATCTTCAGCCACAGACCTATCCTGAAATATTGAGATCAAATCTTGCCAACACAGTTCTTACTTTGAAGAAACTGGGTATAGACGATCTAGTGCATTTTGATTTCATGGACCCTCCTGCTCCCGAGACCTTAATGCGTGCATTGGAAGTGTTGAATTACTTGGGTGCACTGGATGACGATGGTAACTTAACTAAACTGGGTGAGATTATGAGTGAATTTCCCTTGGACCCTCAGATGTCAAAGATGCTCGTTGTCAGTCCTGAATTCAACTGTTCAAATGAGATTCTGTCAGTTTCTGCCATGCTTTCAGTACCCAATTGCTTTGTCCGGCCTAGGGAGGCACAAAAAGCTGCGGATGAAGCTAAAGCTAGGTTCGGGCACATTGATGGAGATCATCTCACTCTGTTGAATGTCTATCATGCGTACAAGCAAAATAATGAGGATCCCTCTTGGTGCTACGATAACTTTGTTAATCATAGGGCATTGAAATCAGCTGATAATGTTAGACAACAATTAGTGCGTATCATGTCCCGGTTTAATCTGAAGCTATGCAGCACTGACTTTAATAGCCGTGACTACTATGTCAACATAAGAAAAGCTATGCTAGCTGGGTATTTCATGCAGGTAGCTCATCTGGAGCGTACAGGACACTACTTGACAGTGAAAGACAACCAGGTGGTGCATTTGCATCCATCCAATTGCCTGGACCACAAGCCTGAATGGGTCATTTATAATGAATATGTTCTTACCAGTCGGAATTTTATTCGTACTGTTACAGACATACGTGGTGAATGGTTGGTTGATATAGCACCACATTACTATGATTTGTCTAATTTCCCCCAATGTGAGGCAAAACGTGTCCTTGAGAGACTTTACAAGAAGCGAGAAAAGGAAAAGGAGGAAGCCAGGAGCCGCAGATGA 2166 0.4409 MGTERKRKVSLFDVVDDSAAKMAKSNGGAAANNLTNHWTARPYSQRYFEILEKRKTLPVWHQKEEFLQVLKDNQTLILVGETGSGKTTQIPQFVLDAVELETPDKRRKMMVACTQPRRVAAMSVSRRVAEEMDVTIGEEVGYSIRFEDCSSAKTVLKYLTDGMLLREAMTDPLLERYKVIILDEAHERTLATDVLFGLLKEVLKNRPDMKLVVMSATLEAEKFQGYFFGAPLMKVPGRLHPVEIFYTQEPERDYLEAGIRTVVQIHMCEPPGDILVFLTGEEEIEDACRKITKEISNLGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPLKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRIRVESLLVSPISKASAHQRSGRAGRTQPGKCFRLYTEKSFNNDLQPQTYPEILRSNLANTVLTLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLGALDDDGNLTKLGEIMSEFPLDPQMSKMLVVSPEFNCSNEILSVSAMLSVPNCFVRPREAQKAADEAKARFGHIDGDHLTLLNVYHAYKQNNEDPSWCYDNFVNHRALKSADNVRQQLVRIMSRFNLKLCSTDFNSRDYYVNIRKAMLAGYFMQVAHLERTGHYLTVKDNQVVHLHPSNCLDHKPEWVIYNEYVLTSRNFIRTVTDIRGEWLVDIAPHYYDLSNFPQCEAKRVLERLYKKREKEKEEARSRR 721
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma19g02074 721 Pfam DEAD/DEAH box helicase 63 221 IPR011545 GO:0003676|GO:0005524
Gma19g02074 721 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 53 628 IPR027417 -
Gma19g02074 721 Gene3D - 239 421 IPR027417 -
Gma19g02074 721 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 261 441 IPR001650 -
Gma19g02074 721 SMART ha2_5 461 551 IPR007502 GO:0004386
Gma19g02074 721 CDD DEXHc_DHX15 45 235 IPR044756 GO:0003724|GO:0005524
Gma19g02074 721 PANTHER ATP-DEPENDENT RNA HELICASE 1 720 - -
Gma19g02074 721 CDD SF2_C_RHA 240 408 - -
Gma19g02074 721 SMART ultradead3 54 245 IPR014001 -
Gma19g02074 721 Coils Coil 700 720 - -
Gma19g02074 721 Pfam Helicase conserved C-terminal domain 267 399 IPR001650 -
Gma19g02074 721 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 67 236 IPR014001 -
Gma19g02074 721 SMART helicmild6 282 400 IPR001650 -
Gma19g02074 721 Pfam Helicase associated domain (HA2) 462 550 IPR007502 GO:0004386
Gma19g02074 721 Pfam Oligonucleotide/oligosaccharide-binding (OB)-fold 612 688 IPR011709 -
Gma19g02074 721 PANTHER PRE-MRNA-SPLICING FACTOR ATP-DEPENDENT RNA HELICASE DEAH3-RELATED 1 720 - -
Gma19g02074 721 Gene3D - 8 238 IPR027417 -
Gma19g02074 721 Gene3D - 445 553 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma19g02074 Gma-Chr19 49648063 49651993 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma19g02074 K12820 - gmx:100817506 1392.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma19g02074 19 49648063 49651993 Gma19g02074 19 49648063 49651993 ECH
Gma19g02074 19 49648063 49651993 Gma03g02037 03 45959228 45962700 GST