Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma19g02001 ATGGAAACCAGTGCGGCCATGGATGTCGAGGAGCAACCTTCACCCAACGCAAGCGACGTTAAACGCTTCGGCCTTAAAAACTCTATTCAAACCAACTTCGGCGACGACTATGTTTTCCAAATCGTCCCAAACGATGATTGGAGTGCAATGGCGGTGTCACTGTCAACGAACGCAGTGAAACTGTATTCACCTGTGGCGGGTCAGTATTATGGAGAATGCAAGGGTCACTCTGAAACCATCAATCAGATTTTGTTTTCGGGTCCTTCAAATCCCCATGTTTTGTGTTCCTGTTCTTCTGATGGCACCATTAGAGCTTGGGACATAAGGACTTTTCAGCAGGTTTCTTCCATCAATGCCGGTCCTTCTCAAGAGGTTTTCAGCTTCTGTATTGGAGGGACTGGTGGAAATTTAGTAGCCGCCGGGTGTAAATCGCAGATACTGTTCTGGGATTGGAGAAATATGAAGCAAGTTGCATGCCTGGAGGACTCTCATGTGGATGATGTCACTCAGGTTCATTTTGTCCCTAATGAACAAGGCAAGCTGATTTCTGCTTCAGTAGATGGGTTGATCTGCACATTTGATGCTACTGGAGATATCAATGATGATGATCATCTAGAATCAGTGATTAACATGGGGACTTCAATTGCAAAGGTGGGGATTTTTGGAGAGAATTATCAGAAGCTTTGGTGCTTAACACATATTGAAACCCTGGGTATCTGGAACTGGAAAGATGGTAGAAATGAAGGAAACTTCTCAGATGCTCGTACTATAGCTTCTGAAAGTTGGAACTTGGATCATGTTGACTATTTCATTGATTGCCACTATTCCAGAGAAGCTGAAAAACTATGGGTGATTGGTGGCACTAATACTGGTACTATGGGCTACTTTCCTGTAAATTACGAAGGAGTGGCTACAATTGGAGCTGCAGAAGCAATTCTTGAAGGAGGCCACGCAAGTGTTATTAGGAGTGTTTTACCCATGTCAACAATTCCTAGTGGACCTACTAATAGTCCTAGCCAAGGCATTTTCGGATGGTCGGGTGGAGAAGATGGTCGGCTGTGTTGTTGGCTCTCTGATGATTCCTCTGAATCAAATCAATCTTGGATTTCAAGCACTTTGACTATGAAGCCAGAAAGAACATGTAAGAAACACCGTCATCACCCCTACTAG 1170 0.4419 METSAAMDVEEQPSPNASDVKRFGLKNSIQTNFGDDYVFQIVPNDDWSAMAVSLSTNAVKLYSPVAGQYYGECKGHSETINQILFSGPSNPHVLCSCSSDGTIRAWDIRTFQQVSSINAGPSQEVFSFCIGGTGGNLVAAGCKSQILFWDWRNMKQVACLEDSHVDDVTQVHFVPNEQGKLISASVDGLICTFDATGDINDDDHLESVINMGTSIAKVGIFGENYQKLWCLTHIETLGIWNWKDGRNEGNFSDARTIASESWNLDHVDYFIDCHYSREAEKLWVIGGTNTGTMGYFPVNYEGVATIGAAEAILEGGHASVIRSVLPMSTIPSGPTNSPSQGIFGWSGGEDGRLCCWLSDDSSESNQSWISSTLTMKPERTCKKHRHHPY 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma19g02001 389 Pfam WD domain, G-beta repeat 70 107 IPR001680 GO:0005515
Gma19g02001 389 Gene3D - 7 217 IPR015943 GO:0005515
Gma19g02001 389 SUPERFAMILY WD40 repeat-like 28 252 IPR036322 GO:0005515
Gma19g02001 389 MobiDBLite consensus disorder prediction 1 20 - -
Gma19g02001 389 ProSitePatterns Trp-Asp (WD) repeats signature. 94 108 IPR019775 -
Gma19g02001 389 SMART WD40_4 66 107 IPR001680 GO:0005515
Gma19g02001 389 SMART WD40_4 153 194 IPR001680 GO:0005515
Gma19g02001 389 SMART WD40_4 110 150 IPR001680 GO:0005515
Gma19g02001 389 ProSiteProfiles Trp-Asp (WD) repeats profile. 73 116 IPR001680 GO:0005515
Gma19g02001 389 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 73 110 - -
Gma19g02001 389 PANTHER UNCHARACTERIZED 21 389 IPR039328 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma19g02001 Gma-Chr19 48996993 49001246 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma19g02001 K24758 - gmx:100794786 814.683
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma19g02001 19 48996993 49001246 Gma19g02001 19 48996993 49001246 ECH
Gma19g02001 19 48996993 49001246 Gma03g01965 03 45385720 45389586 GST