LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gma19g01914	ATGACCCGTTTATCCGAGAGACTGGTCCGTTTGCGTGGGTTGTTTCCGAAACCGACCCGTTTTCTCGCTCTTGTTTCTCTCTCCTATCTCCTTCATCTCTGCAAGTTCCTCGCTCGCTTCCTACTCTCCCAAATCCTACCCGCCATGGACAACCTCTTCTCTGATTACTTCTCCGACGACTTCGATTCCTCCCCCTACCGTCCCCACCGCCGCTTCCTCCAAGACCAAGACCACCACCGCGACCGCGATTTCGCCGCCCTCGAGCGCCTCTACCTCCTCCCCTACACCTGGTGGCTGGAAGCGGAAAACGAAGGTGATCGAGGAGACGCAGTGCTTTATACGGTGTCATGCAATTCCGATTCCGACTCCGAGATTTTGCTTCATCTCAGGAAGGAAGAGGAACCACACAACAACATTGGGGTTTCTGCCCGTCAGTATGCCTTGGTTCCCGAGGGACTTTGGTTGcgtgctctcaagagGTATAATGATTTTAATAATGCAGTGAAAGATTTTGGAAGCATCCCATATGAAGAGGAAAGTTTGCCAGATTTGTTCCCTTTGCAAGTTAAGATATTTGTTTCATGGGAAACCAGTTCACTGGTAGCAAAGATAAGCCAAAAGGAAAATGTGGCTGACTTCTATGATAAAGCTTGTGACATTTTCAATTCTACATATAACCCTGTGCACATTTGGGACTTTTCAGGACAGACAACCCTGTTCTTCTTGAATGACAAATCTAGATTGCCAAATGATTCTCCTGGTCAACTTGGAAAAGAGGTAGTAGTTCTGGAGTTACAAGTTCATGGACTTCCAGATTCTATAGGGGGTAATGGGGGCAATGAGATGATTTTAGATAGGTCTCAGGCGGAATGTTCACATAGTGGCTCTGTTATAATGAATGGAAGCACCGACAATGTGATCCCCTGCATATCAGCGACCTACCATTTTCGAGGCAGTAGCTGTAGAGCAATTCAATCTTTGGGCTTAACAGGATTACAGAATCTTGGAAATACATGTTTTATGAATAGTGCCATTCAGTGTTTAGCTCATACCCCAAAACTTGTTGATTTTTTCCTTGGAGATTACTGTAAAGAGATAAATTATGAAAATCCGTTGGGAATGAATGGAGAACTTGCTCTAGCTTTTGGAGACTTGCTTAGAAAGCTGTGGGTTCCTGGAGCAGCGCCCATTGCACCAAGAACGTTCAAGATGAAACTAGCTAATTTTGCTCCTCAATTTAGTGGTTATAGCCAGCATGACTCTCAAGAACTTCTTGCTTTTTTGTTGGATGGATTGCATGAGGACCTTAATCGTGTAAAACGCAAACCATATCATGAAGTTAAGGATGCAGATGGTCGTCCAGATGAAGAAGTGGCAGAAGAGTATTGGCGAAATCACCTTGCTCGCAATGACTCCATAGTAGTTGATTTGTGCCAAGGTCAATTTCGGTCGACATTGGTTTGCCCTATTTGCAAGAAGGTTTCGATCACATTTGACCCTTTTATGTATCTATCTCTGCCTTTACCTTCTACTACGATACGGACCATGACTTTGACGGTCATAAGCACTGATGGGATAACATCGCCTTCCACAATTACGGTAACAGTGCCTGAAAGTGGAACACTCAAGGATCTTATTGGGGCATTAAGTACTTCTTGTTCTCTGAGAGATGATGAAACCCTCTTGGTGGCTGAGATATACAGGAATAAAATTTTTCGAGTATTCGAGGATCCATGTGATTTGTTAGTTGAAATTAGAGATCAGGACAAACTTGTCGCTTACCGAATGCAGAAGTGTAATGAGCCTAGTCCCTTGGTTGTTTTTTTGCATGAACGTTTGGCGGAAAATTTTGGGAAGGAGAGGTTTGAAAACAGGTTGTTTGGTATTCCGCTTGTTACAAGGTGGTCCAGTATTTCCTGTGGATATGATGATGTTCAAAAGGAGTTTCTGAAGTTAATCAATCCATTTCTGATGCGCACTGAAGATGTATTAGATGAGTATGATAAGAATGATGGTGTTAATAAAAGAGTAAGTGAAGATGATGAATTGGGTGATGCTACTAACTCTGCAGCAATAGGAAATGATGCAGACTCAAACAGTGGAACAGAGGATGGCATTCATTCTTCAACTGCCTTTGAATTCTACTTACAAGGAATAGAGAGGGCGAAGATAATAGTGAAAAAACCATTACCACAAGTCACAACATTGCCTGGAAAGCTGCCTGTGGTAGTTGTCTTGTGGTCGGATAAGATGCTTAAAATGTATGATACATTCCTGCTTGACTCATTGCCTGAGGTTTTCAAGCCCCAGCTATTTGCCAAGAGAATGCAAGAATCAGTTTCTATTTACAAGTGCCTTGAAGCCTTCTTGAAAGAGGAACCTCTTGGGCCAGAAGACATGTGGTACTGTCCTCACTGCAAAGAACCTCAGCAAGCATATAAGAAACTAGATCTTTGGAGATTGCCTGAAATTCTTGTTGTTCATTTGAAGAGGTTCTCATACAGCCGTTACTTCAAGAACAAGCTGGAAGCATTTGTTGATTTCCCAATTAATGATCTGGACTTATCAACATATGTAGCCCACGGGAATAGCCAGTCTTCCAACCGCTATGTGTTATATGCAATTAGTTGTCATTATGGAGGGTTAGGAGGAGGTCACTATACAGCATTTGTCCGTTATGGCTATGATAAATGGTATGATTTTGATGACAGCAGGGTCGAATCTGTAAAAGAAGCAAAAATGGAATCTGATGCACTGACATGGGGAGACAAACTCATGCTATGGGGATTGTCATTCCATGGTTTTCATGGAGCAAAGCCCGAAGAAAGGACGCTGGGCCAGAAGTTCTTCATAGATATAGATGCTTGGATGGATCTCAAAGCAGCTGGCAAATCTGATCACTTATCAGATACCGTTTGTTACACAGAAGAAATATATGATATAGCTAAGGAAGTTCTTGAAGGCTCACCTCACAACCTTCTGGAGTCTCTGGCCCAAAAAATTGCAATTACTATCACAAATCATAAAGAAATATCTGCTGTTCGAGTGAAGGTTGGAAAGCCTCATGTTTACTGCTTAGGCGTTGAGATTCTTAGACGCAGAAGTTTCATATTTACTGCTGCAGAATTTTTATATTTTCACGTTCCACTTGAGACAAAAGCAACGTAA	3168	0.4233	MTRLSERLVRLRGLFPKPTRFLALVSLSYLLHLCKFLARFLLSQILPAMDNLFSDYFSDDFDSSPYRPHRRFLQDQDHHRDRDFAALERLYLLPYTWWLEAENEGDRGDAVLYTVSCNSDSDSEILLHLRKEEEPHNNIGVSARQYALVPEGLWLRALKRYNDFNNAVKDFGSIPYEEESLPDLFPLQVKIFVSWETSSLVAKISQKENVADFYDKACDIFNSTYNPVHIWDFSGQTTLFFLNDKSRLPNDSPGQLGKEVVVLELQVHGLPDSIGGNGGNEMILDRSQAECSHSGSVIMNGSTDNVIPCISATYHFRGSSCRAIQSLGLTGLQNLGNTCFMNSAIQCLAHTPKLVDFFLGDYCKEINYENPLGMNGELALAFGDLLRKLWVPGAAPIAPRTFKMKLANFAPQFSGYSQHDSQELLAFLLDGLHEDLNRVKRKPYHEVKDADGRPDEEVAEEYWRNHLARNDSIVVDLCQGQFRSTLVCPICKKVSITFDPFMYLSLPLPSTTIRTMTLTVISTDGITSPSTITVTVPESGTLKDLIGALSTSCSLRDDETLLVAEIYRNKIFRVFEDPCDLLVEIRDQDKLVAYRMQKCNEPSPLVVFLHERLAENFGKERFENRLFGIPLVTRWSSISCGYDDVQKEFLKLINPFLMRTEDVLDEYDKNDGVNKRVSEDDELGDATNSAAIGNDADSNSGTEDGIHSSTAFEFYLQGIERAKIIVKKPLPQVTTLPGKLPVVVVLWSDKMLKMYDTFLLDSLPEVFKPQLFAKRMQESVSIYKCLEAFLKEEPLGPEDMWYCPHCKEPQQAYKKLDLWRLPEILVVHLKRFSYSRYFKNKLEAFVDFPINDLDLSTYVAHGNSQSSNRYVLYAISCHYGGLGGGHYTAFVRYGYDKWYDFDDSRVESVKEAKMESDALTWGDKLMLWGLSFHGFHGAKPEERTLGQKFFIDIDAWMDLKAAGKSDHLSDTVCYTEEIYDIAKEVLEGSPHNLLESLAQKIAITITNHKEISAVRVKVGKPHVYCLGVEILRRRSFIFTAAEFLYFHVPLETKAT	1055

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gma19g01914	1055	Pfam	Dihydroneopterin aldolase	927	1024	IPR006157	GO:0004150\|GO:0006760
	Gma19g01914	1055	ProSitePatterns	Ubiquitin specific protease (USP) domain signature 1.	331	346	IPR018200	GO:0004843\|GO:0006511
	Gma19g01914	1055	CDD	Peptidase_C19R	754	911	-	-
	Gma19g01914	1055	TIGRFAM	folB: dihydroneopterin aldolase	923	1022	IPR006156	GO:0004150\|GO:0006760
	Gma19g01914	1055	SUPERFAMILY	Tetrahydrobiopterin biosynthesis enzymes-like	923	1033	-	-
	Gma19g01914	1055	PANTHER	UBIQUITIN CARBOXYL-TERMINAL HYDROLASE	48	916	-	-
	Gma19g01914	1055	PANTHER	UBIQUITIN CARBOXYL-TERMINAL HYDROLASE	48	916	-	-
	Gma19g01914	1055	TIGRFAM	folB_dom: FolB domain	923	1023	IPR006157	GO:0004150\|GO:0006760
	Gma19g01914	1055	Gene3D	Cysteine proteinases	318	560	-	-
	Gma19g01914	1055	ProSitePatterns	Ubiquitin specific protease (USP) domain signature 2.	870	887	IPR018200	GO:0004843\|GO:0006511
	Gma19g01914	1055	SUPERFAMILY	Cysteine proteinases	328	914	IPR038765	-
	Gma19g01914	1055	ProSiteProfiles	Ubiquitin specific protease (USP) domain profile.	330	924	IPR028889	-
	Gma19g01914	1055	CDD	DHNA_DHNTPE	923	1033	IPR006157	GO:0004150\|GO:0006760
	Gma19g01914	1055	SMART	FolB_2	925	1034	IPR006157	GO:0004150\|GO:0006760
	Gma19g01914	1055	Gene3D	-	925	1036	IPR043133	-
	Gma19g01914	1055	MobiDBLite	consensus disorder prediction	674	703	-	-
	Gma19g01914	1055	Pfam	Ubiquitin carboxyl-terminal hydrolase	330	916	IPR001394	GO:0004843\|GO:0016579
	Gma19g01914	1055	Gene3D	Cysteine proteinases	622	924	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gma19g01914	Gma-Chr19	48342218	48353808	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gma19g01914	781	910	Miscellaneous Gene Families	AT4G31670	36.842	1.60e-16	82.4

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gma19g01914	-		K21343	gmx:100791802	1805.42

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Gma19g01914	19	48342218	48353808	Gma03g01874	03	44709128	44711918	GST