Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma19g01872 ATGATCAAGTCCTCCTCCATGGCTTCAATTGCCAAAATGCTTGAAGGCAAAGTGGCGATAATCACAGGAGGAGCAAGTGGCATTGGTGCCGCCACCGCCAAGCTATTCGTCCAACACGGCGCCAAAGTAATCATTGCCGACGTGCAAGACGAGTTAGGCCAGTTCCACTGCAAAACCCTCGGCACAACAAACATTCACTACGTCCACTGCGACGTAACCAGCGACTCCGACGTCAAAAACGTGGTCGAATTTGCCGTGTCCAAGTATGGCAAGCTCGACATAATGTACAACAACGCCGGCATCTCCGGAGACTCAAATCGCTCCATAACGACATCCGACAACGAAGGCTTTAAGAATGTTTTCGGGGTTAACGTGTACGGAGCTTTCTTGGGCGCCAAGCATGCCGCTAGGGTCATGATCCCCGCAAAGAGAGGGGTTATTCTCTTCACCTCAAGCGTTGCTTCGCTTCTCGGCGGCGAAACAACGCACGCTTACGCTGTTTCGAAGCACGCGGTGGTGGGGCTAATGAAGAACCTGTGCGTGGAACTTGGGGAACATGGGATCAGAGTGAATTGCGTTTGTCCAGGTGGAATTCCCACTCCGATGCTCAACAATGCGTTGAAGATGAACAAGAAAGAGACGCAGGAAGTGCTGTGTAAGGTTGCGGTGTTGAAAGGAACGGTTCTTGAAGCCGAGGACATAGCCAAAGCTGCAGTTTATTTGTGCAGCGACGAGGCCAAGTTTGTGAGTGGAGTTAACTTTGTCTTGGACGGAGGTTATAGCATCACCAATAATTCTTTCACTTCTGCGCTCAACGCTCTCATCAACAACAACCATGCTTAG 843 0.5077 MIKSSSMASIAKMLEGKVAIITGGASGIGAATAKLFVQHGAKVIIADVQDELGQFHCKTLGTTNIHYVHCDVTSDSDVKNVVEFAVSKYGKLDIMYNNAGISGDSNRSITTSDNEGFKNVFGVNVYGAFLGAKHAARVMIPAKRGVILFTSSVASLLGGETTHAYAVSKHAVVGLMKNLCVELGEHGIRVNCVCPGGIPTPMLNNALKMNKKETQEVLCKVAVLKGTVLEAEDIAKAAVYLCSDEAKFVSGVNFVLDGGYSITNNSFTSALNALINNNHA 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma19g01872 280 Gene3D - 4 276 - -
Gma19g01872 280 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 15 262 IPR036291 -
Gma19g01872 280 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 152 180 IPR020904 GO:0016491
Gma19g01872 280 PANTHER SECOISOLARICIRESINOL DEHYDROGENASE-RELATED 4 271 - -
Gma19g01872 280 Pfam Enoyl-(Acyl carrier protein) reductase 23 261 - -
Gma19g01872 280 PANTHER 3-OXOACYL-(ACYL-CARRIER-PROTEIN) REDUCTASE (AFU_ORTHOLOGUE AFUA_6G11210) 4 271 - -
Gma19g01872 280 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 90 101 IPR002347 -
Gma19g01872 280 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 145 153 IPR002347 -
Gma19g01872 280 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 165 184 IPR002347 -
Gma19g01872 280 PRINTS Glucose/ribitol dehydrogenase family signature 18 35 IPR002347 -
Gma19g01872 280 PRINTS Glucose/ribitol dehydrogenase family signature 90 101 IPR002347 -
Gma19g01872 280 PRINTS Glucose/ribitol dehydrogenase family signature 139 155 IPR002347 -
Gma19g01872 280 PRINTS Glucose/ribitol dehydrogenase family signature 165 184 IPR002347 -
Gma19g01872 280 PRINTS Glucose/ribitol dehydrogenase family signature 186 203 IPR002347 -
Gma19g01872 280 PRINTS Glucose/ribitol dehydrogenase family signature 224 244 IPR002347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma19g01872 Gma-Chr19 47925724 47927124 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma19g01872 14 271 Acyl Lipid Metabolism Gene Families AT3G55290 30.827 2.07e-27 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma19g01872 - - gmx:100783841 545.043
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma19g01872 19 47925724 47927124 Gma19g01872 19 47925724 47927124 ECH