Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma19g01871 ATGCTGAGCCAAAACCGAAGCACCATGGACATGATTCCTGGGAAGATCCGAAAACGAGGCTGTTcctcctccgcctcctccgcctcctcctcttcctccgTGCTCCACAACTACCGCTTCAAGAGGACTATTCTCGTCGGAAAGCGGGGCGGATCTAGTACGCCCGTGCCCACGTGGAAGCTCATGAGCTCGAGATCTCCGCTCCGGGCATTGGCCTCCCCCAAATACCCGCCGTCGCAGACGGCTAACAAGTCCCTCCAAGCTCCGGTCTCCGCCAGGAAGCTCGCCGCCACGCTCTGGGAGATGAACGAGATTCCTTCGCCCAGCGTCAGGTCCAAGAAGGAACTCAGAACCAGAGAAAGAGTTCCCAGGTCCATGCGTTCTGGTTCTTTGCCTCCCCATTTGTCCGATCCATCACACAGTCCTGTGTCCGAGAGAATGGATCGATCTGGAACCGGAAGTCGCCAAAAAAGAACTCCGTCTATTTCTCACAGGGCTAGGATCACTGAACACCATGTTGGTCCTTTGGATTCTCTTAGCAATGCCAGTCTCATGGAGATTGAAACTAGATCCCGAGCACAGACCCCTGCTTCATCTGCTGTTGGAGTTAAAGGACGTTTAAAAGATGTTAGTAATGCTTTAACGACATCCAAAGAGCTACTTAAAATTATAAACCGGATGTGGGGTCATGAAGATCGTCCTTCATCTAGTATGTCTCTTATCTCAGCTCTGCATACTGAGCTGGAGAGGGCTCGCCTACAGGTCAATCAACTTATCCAGGAACAACGCTCAGATCAGAATGAGATAAATTATTTGATGAAGTGTTTTGCTGAAGAAAAGGCTGCTTGGAAAAACAAGGAGCAAGAAATTGTTGAGGTTGCAATTGAATCTATTGCTGGGGAACTCGATGTAGAGAGGAAACTCAGGAGACAATTAGAAAGCTTGAACAAGAAGCTTGGGAGAGAACTGGCTGACACTAAAGCTTCCCTTCTTAAGGTGGTGAAAGAGCTTGAAAGTGAGAAGAGAGCAAGAGAAATTATTGAGCAAGTATGTGATGAGTTAGCAAGAGATGCTGATGAAGATAAGTCTGAGATTGAGAAACAAAAGAGAGTGTCTACAAAAGTTTGTGAAGAGGTAGAGAAAGAAAAGGAAATAATGCAGTTGACCGATAGGTTACGTGAGGAGAGAGCTCAAAAGAAACTCTCTGATGCAAAATATCAGCTTGAGGAAAAGAATGCAGCTGTTGATAAGCTAAGGAATCAACTTGAAGTTTTTCTTGGAGGCAAACAAGTTAGAGAAAAGAGTCGCAGTTCCACTCACTTGAATGATGAAGAAATTGCTGCCTATCTCAGCAGAAGCCGATTAGGTTCCCATCTCGTTGAAGATAAAGAAGATGATGGAGGAGAGGTTGACAATGGAGTAGAATGCGAGGAGGAATCTGCTGAAAGTGATCTGCATTCTATAGAGTTAAATATGGACAACAACAAGAGTTATAAGTGGACCTACCCTCCTGAAAGCAGATTTGATACAAGAAGATATCCAATTGAGGAAGAAGTGAAAGGTAGTAGGAGGTCTACCTCTGGGAAAACTTCAAGGAAAAGCACATCTCTGCAAAGGAGTATATCAGATGGAATGGAATGGGGAGTCCAAGCTGATAAGCTTCAAAATTCAGGAGATGGGATAGATTGGGAAAGCTTTTATGAACTGGAAAAGCAAGCTCAAGGAAAAGGTTACGGGGATGAAATGCAAGGCTATAAATCAGTGAAAGGTCTTAGGGATCAGATATTGGCTGGTTCTAGGCTTGCATCTTATAGAGGTTATGCCAGTCCAACTAGACAATTTTCCCAGCCTTGGTCATCACGAGATCTCACAAATAACTTCCAGGAAAGACCTGCTACAGCACAGGGCAATGGTCTAAAATCAAGGTTAGGGGAAGCCAGGGGTGAGGGCCAGAATCTAAGGAAGTCAAAAAGGTATGATCGTGTTTGTAGAGTTCAGAACATGTTATATAAGTATAGCGAGTTTTTGTTTTCTCCTCTAACATATGCTCAAGGTTGTTCCTTCTATCCCTTTCTTTTGGTCTTAGGTCATATATCAATGGCAACTTCAACCTCTGCACTCAATAAAAGGCTGGAAGGAAAAGTTGCACTGATCACAGGAGGAGCTAGTGGCATCGGCAAACGCACTGCAGAAGTGTTCGCTCAGCAAGGAGCCAAAGTAGTGATCGCTGACATCCAAGACGAACTGGGACATTCCGTTGCTCAGTCCATAGGGCCATCAACATGTTGTTATGTCCATTGCGATGTCACCGATGAGAACCAAATAAAAAATGCCGTCCAAAAAGCCGTAGATGCTTATGGGAAGCTAGACATCATGTTCAACAACGCCGGCATTGTTGATCCCAACAAGAACCGAATCATTGACAACGATAAGGCAGATTTCGAACGTGTCCTAAGCGTCAATGTCACGGGTGTTTTCCTTGGGATGAAGCATGCGGCGCAGGCGATGATCCCAGCACGCAGTGGTAGCATCATCTCTACGGCCAGCATAAGCTCCTACGTTGGTGGTGCAGCCTCGCATGCTTACTGTTGTGCTAAGCATGCTGTGGTTGGTCTAACTAAAAATGCAGCAGTTGAGCTTGGACAGTTCGGAATAAGGGTGAATTGTTTGTCACCTTACGCTCTTGCTACACCTTTGGCCACCAAGTTTGTTGGAGCTAATGATGAGGAGCTTGAGACTATCATGAACTCACTGGCTAATCTCAAGGGTGTCACTCTTAAAGCTGAGGATGTGGCTAATGCCGCACTTTATTTTGCTAGTGATGATTCCAGGTACGTCAGTGGGCAAAATTTGCTCATAGATGGAGGCTTCAGCATTGTTAATCCTTCCTTTCACATGTTTCAGTACCCGGACTCGGAGTCTTGA 2925 0.4492 MLSQNRSTMDMIPGKIRKRGCSSSASSASSSSSVLHNYRFKRTILVGKRGGSSTPVPTWKLMSSRSPLRALASPKYPPSQTANKSLQAPVSARKLAATLWEMNEIPSPSVRSKKELRTRERVPRSMRSGSLPPHLSDPSHSPVSERMDRSGTGSRQKRTPSISHRARITEHHVGPLDSLSNASLMEIETRSRAQTPASSAVGVKGRLKDVSNALTTSKELLKIINRMWGHEDRPSSSMSLISALHTELERARLQVNQLIQEQRSDQNEINYLMKCFAEEKAAWKNKEQEIVEVAIESIAGELDVERKLRRQLESLNKKLGRELADTKASLLKVVKELESEKRAREIIEQVCDELARDADEDKSEIEKQKRVSTKVCEEVEKEKEIMQLTDRLREERAQKKLSDAKYQLEEKNAAVDKLRNQLEVFLGGKQVREKSRSSTHLNDEEIAAYLSRSRLGSHLVEDKEDDGGEVDNGVECEEESAESDLHSIELNMDNNKSYKWTYPPESRFDTRRYPIEEEVKGSRRSTSGKTSRKSTSLQRSISDGMEWGVQADKLQNSGDGIDWESFYELEKQAQGKGYGDEMQGYKSVKGLRDQILAGSRLASYRGYASPTRQFSQPWSSRDLTNNFQERPATAQGNGLKSRLGEARGEGQNLRKSKRYDRVCRVQNMLYKYSEFLFSPLTYAQGCSFYPFLLVLGHISMATSTSALNKRLEGKVALITGGASGIGKRTAEVFAQQGAKVVIADIQDELGHSVAQSIGPSTCCYVHCDVTDENQIKNAVQKAVDAYGKLDIMFNNAGIVDPNKNRIIDNDKADFERVLSVNVTGVFLGMKHAAQAMIPARSGSIISTASISSYVGGAASHAYCCAKHAVVGLTKNAAVELGQFGIRVNCLSPYALATPLATKFVGANDEELETIMNSLANLKGVTLKAEDVANAALYFASDDSRYVSGQNLLIDGGFSIVNPSFHMFQYPDSES 974
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma19g01871 974 MobiDBLite consensus disorder prediction 511 525 - -
Gma19g01871 974 Coils Coil 241 268 - -
Gma19g01871 974 Pfam Enoyl-(Acyl carrier protein) reductase 720 958 - -
Gma19g01871 974 MobiDBLite consensus disorder prediction 108 124 - -
Gma19g01871 974 Gene3D - 700 968 - -
Gma19g01871 974 Coils Coil 378 421 - -
Gma19g01871 974 MobiDBLite consensus disorder prediction 1 32 - -
Gma19g01871 974 MobiDBLite consensus disorder prediction 462 485 - -
Gma19g01871 974 PANTHER PLANT/F24K9-26 PROTEIN 9 658 - -
Gma19g01871 974 Coils Coil 337 371 - -
Gma19g01871 974 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 712 960 IPR036291 -
Gma19g01871 974 Coils Coil 305 329 - -
Gma19g01871 974 MobiDBLite consensus disorder prediction 145 159 - -
Gma19g01871 974 MobiDBLite consensus disorder prediction 108 171 - -
Gma19g01871 974 MobiDBLite consensus disorder prediction 528 543 - -
Gma19g01871 974 MobiDBLite consensus disorder prediction 630 652 - -
Gma19g01871 974 CDD secoisolariciresinol-DH_like_SDR_c 710 958 IPR045309 GO:0016616
Gma19g01871 974 MobiDBLite consensus disorder prediction 511 544 - -
Gma19g01871 974 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 849 877 IPR020904 GO:0016491
Gma19g01871 974 PRINTS Glucose/ribitol dehydrogenase family signature 715 732 IPR002347 -
Gma19g01871 974 PRINTS Glucose/ribitol dehydrogenase family signature 883 900 IPR002347 -
Gma19g01871 974 PRINTS Glucose/ribitol dehydrogenase family signature 921 941 IPR002347 -
Gma19g01871 974 PRINTS Glucose/ribitol dehydrogenase family signature 836 852 IPR002347 -
Gma19g01871 974 PRINTS Glucose/ribitol dehydrogenase family signature 862 881 IPR002347 -
Gma19g01871 974 PRINTS Glucose/ribitol dehydrogenase family signature 787 798 IPR002347 -
Gma19g01871 974 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 787 798 IPR002347 -
Gma19g01871 974 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 842 850 IPR002347 -
Gma19g01871 974 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 862 881 IPR002347 -
Gma19g01871 974 PANTHER GB|AAF24581.1 9 658 IPR043424 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma19g01871 Gma-Chr19 47913085 47920187 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma19g01871 707 957 Miscellaneous Gene Families AT4G05530 31.518 3.19e-26 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma19g01871 - - gmx:100783303 1224.15
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma19g01871 19 47913085 47920187 Gma19g01871 19 47913085 47920187 ECH
Gma19g01871 19 47913085 47920187 Gma03g01832 03 44325657 44331884 GST