Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma19g01862 ATGGTGATGTTCACGGTAGCATATTACTGGGAGATGAGATTTGTCAAGGAGATTCGTCAAATACTTTCTCTGGATTGGCAATTTAGTTTTACTCTCTCTTTATGCTCTGCTATTCTTATTCATTCACTCTGCTCCCTCACTCCAACTTTCAAAACCCTAATTTCTTCCTCGAAATCTTCTCCTCCCTTCCCCGATTTCATTTCCACTGCTTTTTCCTTCGCTTGGATGGCAGGGGCGGATAATAGTGACGGCAACGGGAGTGAAAGGGAATTAGCGGGAAATAGCGATAACGGTTCTGTGGAAGTTGCAGAGGCTTCTGTTAGTGATAGTGGTTGTGAAGGGAACGACAGCGTTTCTTACGCGAACGTCTTGCGTTCGAGGAACAAGTTTGTTGATGCTCTTGCTATCTACGAGCGCGTGTTGGAGAGTGATGGTGCAAATGTAGAGGCGCTCATTGGAAAAGGAATATGCCTTCAGATGCAGAATAAGGGAAGGCTTGCGTACGAGAGTTTTTCTGAGGCTATCAAGGTGGATCCTCAAAATGCTTGTGCTCTAACGCATTGCGGCATTCTGCATAAGGACGAGGGTCGCCTTGTGGAGGCTGCTCAGTCGTATCAGAAGGCTTTACAAGTGGATCCTTCATACAAAGCAGCTGCTGAATGCCTTGCCATTGTTTTAACAGATATTGGTACCAACATAAAGCTGGCAGGGAACACTCAGGATGGAATTCAAAAATATTTTGAGGCCCTCAAAGTAGATCCGCACTATGCTCCTGCATACTATAATCTTGGTGTGGTCTATTCTGAAATGATGCAATATGACACAGCCCTCAGTTTCTATGAAAAGGCTGCATCAGAGAGGCCAGTCTATGCCGAGGCTTATTGCAATATGGGTGTGATTTTTAAAAATCGCGGTGATTTGGAATCGGCTATTACTTGTTATGAGAGGTGTTTAACTGTTTCACCTAACTTCGAGATTGCAAAGAATAATATGGCTATAGCATTAACAGATTTGGGAACAAAGGTTAAATTGGAGGGGGACATCAACCAAGGTGTGACTTTGTATAAGAAAGCTTTGTATTACAACTGGCATTACGCTGATGCCATGTATAATCTTGGGGTTGCTTATGGTGAGATGCTTAAGTTTGATATGGCCATTGTATTCTATGAACTTGCCTTTCACTTCAATCCCCATTGTGCGGAAGCTTGTAACAATCTCGGAGTTATATATAAAGATCGTGAAAACCTTGATAAAGCTGTAGAGTGCTACCAGCTTGCTTTGTCAATCAAACCTAATTTTTCACAGTCGTTAAATAACCTCGGTGTTGTATACACTGTCCAGGGTAAAGTGGATGCTGCTGCAAGTATGATTGAGAAAGCTATTATTGCAAATCCAACATATGCAGAGGCATACAATAACCTAGGAGTTCTTTATAGGGATGCTGGTGATATAGCTCGAGCAATTAATGCTTATGAGCAATGTCTTAAGATTGATCCTGATTCTCGAAATGCTGGCCAGAATCGCTTGCTTGCAATGAATTACATAGAGGAAGGACATGATGACACACTTTTTGAGGTTCACAGGGACTGGGGTAGGCGATTCATGAGACTATATTCACAGTACACATCATGGGACAACTCAAAAGATCCTGAACGGCCCCTAGTGATAGGCTATGTATCTCCTGATTATTTTACTCATTCTGTGTCATATTTCATAGAAGCGCCCCTTGTCTATCATGACTACTCCAATTTCAAAGTGATTGTTTATTCAGCAGTTGTCAAGGCAGATTCAAAAACCATTAGATTTAGAGAGAAAGTTGTAAATAAGGGTGGTATCTGGAAAGATATTTATGGAATTGATGAAAAGATGGTTGCCAACATGGTTAGAGAAGATCAAGTTGATATTTTGGTAGAACTTACTGGACATACTGCAAACAATAAATTGGGAATGATGGCATGCCGACCTGCACCAATTCTGCAGGTGACTTGGATTGGTTATCCCAATACAACAGGATTGCCTACAATTGATTATAGAATCACTGATTCACTGGCAGACCCTCCTGAAACAAAGCAGAAGCATGTTGAGGAGTTAGTTAGGTTGCCAGAATGCTTCCTTTGTTACACCCCTTCCCTGGAGGCTGGTCCTGTTTGTCCAACTCCTGCTCTTTCCAATGGTTTTGTCACATTTGGTAGTTTCAACAATCTTGCCAAGATTACACCCAAGGTATTGCAGGTTTGGGTGAGGATACTGTGTGCAATTCCGAATTCCCGCCTTGTGGTAAAATGTAAACCTTTTTGCAGTGACAGTGTGCGACAGATATTCCTTTCAACACTAGAGCAGTTAGGTTTAGAACCACTACGTGTTGATCTTCTGCCCCTTATTCTTCTTAACCATGATCATATGCAAGCCTATTCTCTGATGGACATCAGTTTGGATACATTTCCATATGCTGGAACAACAACAACATGTGAATCTTTATATATGGGAGTTCCATGTGTCACTATGGCTGGATCAGTACATGCGCACAATGTTGGTGTTAGTCTTCTTAGCAAAGTTGGACTGGAGCATTTGATTGCCAGAAATGAAGATGAATATGTTGAATTGGCTCAGCAGTTGGCCTCTGACATTTCCGCACTACAAAATTTGAGAATGAGTCTGCGAAATCTCATGTCCAAGTCCCCTCTCTGTGATGGTGCCAAATTTATCCTAGGTCTAGAGTCAACATACAGAAATATGTGGCACAGGTATTGTAGAGGAGATGTTCCATCTTTGAAACGCATGGAATTGTTGCAAGTTGCTACCGGTGACCTGTCAAATAAGAATTCTGAGCCAACAAGGATTGCAAACTCAAGGGAGGACAGTCCTGGATCTGTCAAGGCCAATGGATTTAAAACAAGGCCCGTGTTAAAGCTTAACATACACAGTTGCGAAGAAAACGACGGGTCATCAAATCACAGTAGTAAACAAGGAAAGACGAGTTAA 2982 0.4202 MVMFTVAYYWEMRFVKEIRQILSLDWQFSFTLSLCSAILIHSLCSLTPTFKTLISSSKSSPPFPDFISTAFSFAWMAGADNSDGNGSERELAGNSDNGSVEVAEASVSDSGCEGNDSVSYANVLRSRNKFVDALAIYERVLESDGANVEALIGKGICLQMQNKGRLAYESFSEAIKVDPQNACALTHCGILHKDEGRLVEAAQSYQKALQVDPSYKAAAECLAIVLTDIGTNIKLAGNTQDGIQKYFEALKVDPHYAPAYYNLGVVYSEMMQYDTALSFYEKAASERPVYAEAYCNMGVIFKNRGDLESAITCYERCLTVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVTLYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRENLDKAVECYQLALSIKPNFSQSLNNLGVVYTVQGKVDAAASMIEKAIIANPTYAEAYNNLGVLYRDAGDIARAINAYEQCLKIDPDSRNAGQNRLLAMNYIEEGHDDTLFEVHRDWGRRFMRLYSQYTSWDNSKDPERPLVIGYVSPDYFTHSVSYFIEAPLVYHDYSNFKVIVYSAVVKADSKTIRFREKVVNKGGIWKDIYGIDEKMVANMVREDQVDILVELTGHTANNKLGMMACRPAPILQVTWIGYPNTTGLPTIDYRITDSLADPPETKQKHVEELVRLPECFLCYTPSLEAGPVCPTPALSNGFVTFGSFNNLAKITPKVLQVWVRILCAIPNSRLVVKCKPFCSDSVRQIFLSTLEQLGLEPLRVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLSKVGLEHLIARNEDEYVELAQQLASDISALQNLRMSLRNLMSKSPLCDGAKFILGLESTYRNMWHRYCRGDVPSLKRMELLQVATGDLSNKNSEPTRIANSREDSPGSVKANGFKTRPVLKLNIHSCEENDGSSNHSSKQGKTS 993
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma19g01862 993 ProSiteProfiles TPR repeat profile. 366 399 IPR019734 GO:0005515
Gma19g01862 993 ProSiteProfiles TPR repeat profile. 400 433 IPR019734 GO:0005515
Gma19g01862 993 Gene3D Tetratricopeptide repeat domain 115 221 IPR011990 GO:0005515
Gma19g01862 993 SUPERFAMILY TPR-like 118 340 IPR011990 GO:0005515
Gma19g01862 993 SUPERFAMILY TPR-like 413 869 IPR011990 GO:0005515
Gma19g01862 993 SMART sel1 257 288 IPR006597 -
Gma19g01862 993 SMART sel1 366 397 IPR006597 -
Gma19g01862 993 SMART sel1 468 499 IPR006597 -
Gma19g01862 993 SMART sel1 400 431 IPR006597 -
Gma19g01862 993 ProSiteProfiles TPR repeat profile. 148 181 IPR019734 GO:0005515
Gma19g01862 993 SUPERFAMILY TPR-like 280 504 IPR011990 GO:0005515
Gma19g01862 993 ProSiteProfiles TPR repeat profile. 468 501 IPR019734 GO:0005515
Gma19g01862 993 Gene3D Tetratricopeptide repeat domain 337 522 IPR011990 GO:0005515
Gma19g01862 993 Gene3D Tetratricopeptide repeat domain 222 336 IPR011990 GO:0005515
Gma19g01862 993 ProSiteProfiles TPR repeat profile. 182 215 IPR019734 GO:0005515
Gma19g01862 993 ProSiteProfiles TPR repeat region circular profile. 468 500 - -
Gma19g01862 993 Gene3D Glycogen Phosphorylase B; 711 896 - -
Gma19g01862 993 Pfam Tetratricopeptide repeat 436 461 - -
Gma19g01862 993 ProSiteProfiles TPR repeat profile. 434 467 IPR019734 GO:0005515
Gma19g01862 993 MobiDBLite consensus disorder prediction 935 966 - -
Gma19g01862 993 ProSiteProfiles TPR repeat profile. 291 324 IPR019734 GO:0005515
Gma19g01862 993 ProSiteProfiles TPR repeat region circular profile. 400 432 - -
Gma19g01862 993 SMART tpr_5 400 433 IPR019734 GO:0005515
Gma19g01862 993 SMART tpr_5 223 256 IPR019734 GO:0005515
Gma19g01862 993 SMART tpr_5 332 365 IPR019734 GO:0005515
Gma19g01862 993 SMART tpr_5 148 181 IPR019734 GO:0005515
Gma19g01862 993 SMART tpr_5 257 290 IPR019734 GO:0005515
Gma19g01862 993 SMART tpr_5 366 399 IPR019734 GO:0005515
Gma19g01862 993 SMART tpr_5 114 147 IPR019734 GO:0005515
Gma19g01862 993 SMART tpr_5 182 215 IPR019734 GO:0005515
Gma19g01862 993 SMART tpr_5 434 467 IPR019734 GO:0005515
Gma19g01862 993 SMART tpr_5 291 324 IPR019734 GO:0005515
Gma19g01862 993 SMART tpr_5 468 501 IPR019734 GO:0005515
Gma19g01862 993 MobiDBLite consensus disorder prediction 935 956 - -
Gma19g01862 993 ProSiteProfiles TPR repeat region circular profile. 291 323 - -
Gma19g01862 993 Pfam Glycosyl transferase family 41 722 901 IPR029489 -
Gma19g01862 993 Pfam Glycosyl transferase family 41 545 705 IPR029489 -
Gma19g01862 993 PANTHER UDP-N-ACETYLGLUCOSAMINE--PEPTIDE N-ACETYLGLUCOSAMINYLTRANSFERASE SPINDLY-RELATED 106 928 - -
Gma19g01862 993 ProSiteProfiles TPR repeat region circular profile. 257 288 - -
Gma19g01862 993 Pfam Tetratricopeptide repeat 291 324 IPR001440 GO:0005515
Gma19g01862 993 Pfam Tetratricopeptide repeat 400 433 IPR001440 GO:0005515
Gma19g01862 993 Pfam Tetratricopeptide repeat 257 285 IPR001440 GO:0005515
Gma19g01862 993 Pfam Tetratricopeptide repeat 468 500 IPR001440 GO:0005515
Gma19g01862 993 ProSiteProfiles TPR repeat profile. 257 290 IPR019734 GO:0005515
Gma19g01862 993 Gene3D - 539 710 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma19g01862 Gma-Chr19 47822944 47841241 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma19g01862 272 967 Glycosyltransferase AT3G11540 63.571 0.0 886
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma19g01862 K09667 - gmx:100779014 1820.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma19g01862 19 47822944 47841241 Gma19g01862 19 47822944 47841241 ECH