Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma19g01717 ATGGCAGGCTCAAACATTCTTTCTCACTCTCCTTCCCTTCCCAAAACCTACAGCCACTCCTTAAACCAAAACGCGTTATCCCAAAAGCTTTTTTTTCTGCCCCTCAAATTCAAAGCCACCACAAAACCACGTGCTCTCAGAGCGGTTCTCTCGCAGAACGCTGTCAAAACCTCGGTGGAGGACACAAAGAACGCTCATTTTCAGCACTGTTTCACCAAATCCGAAGATGGGTATCTGTACTGTGAGGGCCTCAAGGTGCATGACATCATGGAATCTGTTGAGAGAAGACCTTTCTATTTGTACAGCAAGCCCCAGATAACTAGGAATGTTGAAGCCTACAAGGATGCATTGGAAGGGTTGAACTCCATAATTGGTTATGCCATTAAGGCCAATAATAACTTGAAGATTTTGGAACATTTGAGGCACTTGGGTTGTGGTGCTGTGCTTGTTAGTGGGAATGAGCTGAAGTTGGCTCTTCGAGCTGGCTTTGATCCCACAAGGTGTATCTTTAATGGGAATGGGAAAATCTTGGAGGATTTGGTCTTGGCTGCTCAGGAAGGTGTGTTTGTCAACATTGATAGTGAGTTTGACTTGGAAAACATTGTAGAGGCTGCAAAAAGGGCTGGGAAGAAGGTCAATGTTTTACTTCGGATTAATCCTGATGTGGATCCACAGGTTCATCCTTATGTTGCCACTGGGAATAAGAACTCTAAATTTGGCATTAGAAATGAGAAGCTGCAGTGCTTTTTAGATGCAGTGAAGGAACATCCTAATGAGCTCAAACTTGTAGGGGCCCACTGCCATCTTGGTTCAACAATTACCAAGGTTGACATTTTCAGGGATGCAGCCACCATTATGATCAACTACATTGACCAAATCCGAGATCAGGGTTTTGAAGTTGATTACTTAAATATTGGTGGAGGACTTGGGATAGATTATTATCATTCTGGTGCCATCCTTCCTACACCTAGAGATCTCATTGACACTGTACGAGATCTTGTTATTTCACGTGGTCTTAATCTCATCATTGAACCAGGAAGATCACTCATTGCAAACACGTGTTGCTTAGTTAACCGGGTGACAGGTGTTAAAACTAATGGATCTAAAAACTTCATTGTAATTGATGGAAGTATGGCTGAACTTATCCGCCCTAGTCTTTATGATGCTTACCAGCATATAGAGCTGGTTTCCCCTGCCCCGTCAAATGCTGAAACAGAAACTTTTGATGTGGTTGGCCCTGTCTGTGAGTCTGCAGATTTCTTAGGAAAAGGAAGAGAACTTCCTACTCCAGCCAAGGGTACTGGTTTGGTTGTTCATGATGCTGGTGCTTATTGCATGAGCATGGCATCAACCTACAATCTAAAGATGCGGCCTCCTGAGTATTGGGTTGAAGATGATGGATCAGTGAGCAAAATAAGACATGGAGAGACTTTTGAAGACCACATTCGGTTTTTTGAGGGGCTTTGA 1467 0.4342 MAGSNILSHSPSLPKTYSHSLNQNALSQKLFFLPLKFKATTKPRALRAVLSQNAVKTSVEDTKNAHFQHCFTKSEDGYLYCEGLKVHDIMESVERRPFYLYSKPQITRNVEAYKDALEGLNSIIGYAIKANNNLKILEHLRHLGCGAVLVSGNELKLALRAGFDPTRCIFNGNGKILEDLVLAAQEGVFVNIDSEFDLENIVEAAKRAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQCFLDAVKEHPNELKLVGAHCHLGSTITKVDIFRDAATIMINYIDQIRDQGFEVDYLNIGGGLGIDYYHSGAILPTPRDLIDTVRDLVISRGLNLIIEPGRSLIANTCCLVNRVTGVKTNGSKNFIVIDGSMAELIRPSLYDAYQHIELVSPAPSNAETETFDVVGPVCESADFLGKGRELPTPAKGTGLVVHDAGAYCMSMASTYNLKMRPPEYWVEDDGSVSKIRHGETFEDHIRFFEGL 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma19g01717 488 Hamap Diaminopimelate decarboxylase [lysA]. 83 486 IPR002986 GO:0008836|GO:0009089
Gma19g01717 488 PANTHER DIAMINOPIMELATE DECARBOXYLASE 56 485 - -
Gma19g01717 488 ProSitePatterns Orn/DAP/Arg decarboxylases family 2 pyridoxal-P attachment site. 126 144 IPR022653 -
Gma19g01717 488 Gene3D Lyase, Ornithine Decarboxylase; Chain A, domain 1 86 482 IPR009006 GO:0003824
Gma19g01717 488 PANTHER DIAMINOPIMELATE DECARBOXYLASE 1, CHLOROPLASTIC-RELATED 56 485 - -
Gma19g01717 488 SUPERFAMILY Alanine racemase C-terminal domain-like 327 483 IPR009006 GO:0003824
Gma19g01717 488 PRINTS Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 126 144 IPR000183 GO:0003824
Gma19g01717 488 PRINTS Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 146 158 IPR000183 GO:0003824
Gma19g01717 488 PRINTS Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 259 272 IPR000183 GO:0003824
Gma19g01717 488 PRINTS Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 341 360 IPR000183 GO:0003824
Gma19g01717 488 PRINTS Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 442 455 IPR000183 GO:0003824
Gma19g01717 488 Pfam Pyridoxal-dependent decarboxylase, C-terminal sheet domain 102 442 IPR022643 GO:0003824
Gma19g01717 488 Pfam Pyridoxal-dependent decarboxylase, pyridoxal binding domain 105 351 IPR022644 GO:0003824
Gma19g01717 488 TIGRFAM lysA: diaminopimelate decarboxylase 73 482 IPR002986 GO:0008836|GO:0009089
Gma19g01717 488 SUPERFAMILY PLP-binding barrel 96 352 IPR029066 -
Gma19g01717 488 PRINTS Diaminopimelate decarboxylase signature 144 161 IPR002986 GO:0008836|GO:0009089
Gma19g01717 488 PRINTS Diaminopimelate decarboxylase signature 232 241 IPR002986 GO:0008836|GO:0009089
Gma19g01717 488 PRINTS Diaminopimelate decarboxylase signature 369 387 IPR002986 GO:0008836|GO:0009089
Gma19g01717 488 PRINTS Diaminopimelate decarboxylase signature 452 474 IPR002986 GO:0008836|GO:0009089
Gma19g01717 488 Gene3D Alanine racemase 103 348 IPR029066 -
Gma19g01717 488 ProSitePatterns Orn/DAP/Arg decarboxylases family 2 signature 2. 297 310 IPR022657 -
Gma19g01717 488 CDD PLPDE_III_DapDC 97 463 IPR002986 GO:0008836|GO:0009089
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma19g01717 Gma-Chr19 46470891 46476010 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma19g01717 K01586 - gmx:100809499 981.089
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma19g01717 19 46470891 46476010 Gma03g01669 03 42776303 42782508 GST