Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma19g01708 ATGATGAACACAGCTAACGGCACGATGATGTCACCGTCGTCTTCGTCGGTAACGGCGCAGTCGCCGGGACTGAAGACCTATTTCAAAACCCCCGAGGGGAGATATAAGCTTCATTACGAGAAGACTCACCCTTCCGGTCTTCTTCATTACGCCCATGGCAAAACCGTTACTCAGCAGGTAACCCTGGCACATCTCAAGGACAAGCCTGCGCCTTCTACCCCAACTGCGTCCTCGTCGTCATCAAGTTTCAGTGCCAGCAGTGGGGTACGGTCAGCGGCAGCTAGATTGCTGGGAGGAAGCAACGGAAGCCGGGCACTTAGTTTTGTTGGAGGCAACGGTGGCAGCAAGAGTAATGGAGGAAATACTAGGATTGGTTCGATTGGTGCTTCAAGTACAAGTAGTGCAATGGCGAATCCGAATTTTGACGGGAAAGGAACTTACTTGATCTTCAATGTCGGAGATGCAATTTTCATTAGTGATTTGAATTCACAAGACAAGGACCCCATAAAGTCTATTCACTTCAGTAACTCGAATCCTGTGTGCCACGCATTTGATCAGGATGCTAAGGATGGGCATGATTTGCTCATTGGTTTGAACTCTGGTGATGTCTACTCAGTGTCATTGAGACAGCAATTACAGGATGTTGGTAAAAAGCCTGTCGGGGCCCTGCATTACAACAGAGATGGTTCTGTCAATAACAGGCAAGATTTAATTACCCAACCCATTGTAATTCGTTGTACTTGTATTGCTTGGGTTCCTGGAGGCGATGGTTCTTTCGTTGTTTCTCATGCTGATGGGAATTTGTACGTATATGAAAAGGCAAGTAACAAAGATGGCGCTGGTGATTCTTCTTTCCCAGTTGTAAAGGATCAAACTCAGTTTTCGGTTGCCCATGCACGTTACAGTAAGAGTAATCCTATAGCGAGATGGCATATATGCCAGGGTTCAATTAATAGTATTTCTTTCTCGATGGATGGGGCATTCTTAGCAACTGTTGGGCGAGATGGTTATTTACGAGTGTTTGATTACTCAAAAGAACAACTTATATGTGGCGGGAAAAGTTATTATGGTGCTTTGTTATGTTGTGCTTGGAGcatggatggaaaatatattttgacgggaggggaagatgatttagttcaagtttggagcatggaagatcgcaaggttgtggcatggggtgagggacataactcatggGTCAGTGGAGTTGCTTTCGATTCATATTGGTCATCTCCAAATTCAAATGACAATGGAGAGACTATTATGTATCGTTTTGGTTCTGTTGGTCAGgatacacaattgcttctatgggacctggaaatggacgagattgtagtgcccttgagacggccacctggtggatccccaacttacagtactggaagTCAGTCATCGCACTGGGACAATGTTGTACCATTAGGTACCTTGCAACCTGCTCCGAGTATGCTGGATGTTCCAAAAATCTCACCGTTGGTTGCTCACCGTGTGCATACTGAACCACTCTCTGGCTTGATATTTACCCAGGAATCTGTGCTTACTGCCTGCCGGGAGGGGCATATTAAAATCTGGATGAGGCCAGGGGTTGCTGAGAGCCAATCTAGCACCTCTGAAAACTTGTTAGCTACCAATCTCAAGGAGAAGCCTTCACTTTCAAGCAAGATCAGCAGCAATTCTAGCTACAAGCAATGA 1692 0.4019 MMNTANGTMMSPSSSSVTAQSPGLKTYFKTPEGRYKLHYEKTHPSGLLHYAHGKTVTQQVTLAHLKDKPAPSTPTASSSSSSFSASSGVRSAAARLLGGSNGSRALSFVGGNGGSKSNGGNTRIGSIGASSTSSAMANPNFDGKGTYLIFNVGDAIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKPVGALHYNRDGSVNNRQDLITQPIVIRCTCIAWVPGGDGSFVVSHADGNLYVYEKASNKDGAGDSSFPVVKDQTQFSVAHARYSKSNPIARWHICQGSINSISFSMDGAFLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSSPNSNDNGETIMYRFGSVGQDTQLLLWDLEMDEIVVPLRRPPGGSPTYSTGSQSSHWDNVVPLGTLQPAPSMLDVPKISPLVAHRVHTEPLSGLIFTQESVLTACREGHIKIWMRPGVAESQSSTSENLLATNLKEKPSLSSKISSNSSYKQ 563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma19g01708 563 MobiDBLite consensus disorder prediction 543 563 - -
Gma19g01708 563 MobiDBLite consensus disorder prediction 1 25 - -
Gma19g01708 563 ProSiteProfiles Trp-Asp (WD) repeats profile. 352 393 IPR001680 GO:0005515
Gma19g01708 563 PANTHER LOW QUALITY PROTEIN: WD REPEAT-CONTAINING PROTEIN 20-LIKE 3 559 - -
Gma19g01708 563 MobiDBLite consensus disorder prediction 111 135 - -
Gma19g01708 563 PANTHER WD REPEAT PROTEIN 3 559 - -
Gma19g01708 563 SUPERFAMILY WD40 repeat-like 154 524 IPR036322 GO:0005515
Gma19g01708 563 MobiDBLite consensus disorder prediction 1 27 - -
Gma19g01708 563 SMART WD40_4 488 525 IPR001680 GO:0005515
Gma19g01708 563 SMART WD40_4 303 342 IPR001680 GO:0005515
Gma19g01708 563 SMART WD40_4 233 272 IPR001680 GO:0005515
Gma19g01708 563 SMART WD40_4 345 384 IPR001680 GO:0005515
Gma19g01708 563 SMART WD40_4 387 439 IPR001680 GO:0005515
Gma19g01708 563 Gene3D - 14 534 IPR015943 GO:0005515
Gma19g01708 563 Pfam WD domain, G-beta repeat 359 384 IPR001680 GO:0005515
Gma19g01708 563 Pfam WD domain, G-beta repeat 314 342 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma19g01708 Gma-Chr19 46363073 46368590 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma19g01708 319 446 Miscellaneous Gene Families AT5G08390 23.438 1.95e-07 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma19g01708 K24741 - gmx:100805756 1008.82
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma19g01708 19 46363073 46368590 Gma19g01708 19 46363073 46368590 ECH
Gma19g01708 19 46363073 46368590 Gma03g01662 03 42696027 42701604 GST